Browse Element(s) Details


OsAffx.26310.1.S1_at

Description tigr:9632.m03227
TID=OsAffx.26310.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g336509/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33610Os.49564.1.S1_at11/114+20171268..20172240expressed protein
LOC_Os04g33620OsAffx.30606.2.S1_x_at11/114+20176783..20177366hypothetical protein
LOC_Os04g33630Os.49129.1.S1_at11/114+20178236..20181835Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os04g33630Os.52100.1.S1_at1/114+20178236..20181835Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os04g33640Os.24051.1.S1_x_at11/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.47778.1.A1_s_at11/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.24051.1.S1_at11/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.24051.2.S1_at10/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.47778.1.A1_at1/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33650OsAffx.26310.1.S1_at9/114+20193522..20196598expressed protein
LOC_Os04g33660Os.24816.1.A1_at11/114+20200327..20202617Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os04g33670Os.55574.1.S1_at11/114+20204614..20205695expressed protein
LOC_Os04g33680Os.47985.1.S1_at11/114+20206158..20207892Glutaredoxin family protein, expressed
LOC_Os04g33690Os.53585.1.S1_at11/114+20210709..20218358Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os04g33700OsAffx.26311.1.S1_at11/114+20218550..20223018ABC transporter transmembrane region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26310.1.S1_at--27--9351Chr04:20193654..20193678 (25 bp)
TCGCGACGCCGATGTGCACTGGGTG
LOC_Os04g33650
OsAffx.26310.1.S1_at--629--4191Chr04:20193715..20193739 (25 bp)
TCTACCAAAGACTCCCCAAATGCTG
LOC_Os04g33650
OsAffx.26310.1.S1_at--322--2291Chr04:20193732..20193756 (25 bp)
AAATGCTGCATCACGTCACATCGAT
LOC_Os04g33650
OsAffx.26310.1.S1_at--744--9691Chr04:20193747..20193771 (25 bp)
TCACATCGATGCTCCACCTTGCGAG
LOC_Os04g33650
OsAffx.26310.1.S1_at--680--451Chr04:20193787..20193811 (25 bp)
ATCTCCACGGACAGAAGCGCCGGGA
LOC_Os04g33650
OsAffx.26310.1.S1_at--777--7171NONE
GTCGGCCGGTACCAGAAAGCGCCAT
NONE
OsAffx.26310.1.S1_at--188--1431Chr04:20196032..20196056 (25 bp)
AGAAAGCGCCATGGGCCTTATCCTC
LOC_Os04g33650
OsAffx.26310.1.S1_at--621--10431Chr04:20196049..20196073 (25 bp)
TTATCCTCCTCCACTTACCGATTAT
LOC_Os04g33650
OsAffx.26310.1.S1_at--1078--4671Chr04:20196077..20196101 (25 bp)
GCGGCTAATATACCAAGTTAAAACT
LOC_Os04g33650
OsAffx.26310.1.S1_at--1043--6751Chr04:20196093..20196557 (25 bp)
GTTAAAACTGGTCAGCCATTCGTAG
LOC_Os04g33650
OsAffx.26310.1.S1_at--353--3911NONE
CTGGTCAGCCATTCGTAGAGATGAA
NONE
Target Sequence 
TCGCGACGCCGATGTGCACTGGGTGGGGCTTCGGCGGCGTCGGAATCTCCACCGCTCCACCTCTACCAAAGACTCCCCAA
ATGCTGCATCACGTCACATCGATGCTCCACCTTGCGAGCCGGCTACCCCGCCGATCTCCACGGACAGAAGCGCCGGGATG
GGGGTGGGGTGCCGCGGGAGGAGCCGGCGGCGACGCGGAGGAACCGTCGGCCGGTACCAGAAAGCGCCATGGGCCTTATC
CTCCTCCACTTACCGATTATGGGGCGGCTAATATACCAAGTTAAAACTGGTCAGCCATTCGTAGAGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26310.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis