Browse Element(s) Details


Os.49564.1.S1_at

Description gb:AK108223.1
DB_XREF= gi:32993432
TID=Os.49564.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49564 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-E12, full insert sequence.
FL= gb:AK108223.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3361011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33590Os.13584.1.S1_at11/114+20151565..20157670hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os04g33600NANA4+20161138..20165762hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os04g33610Os.49564.1.S1_at11/114+20171268..20172240expressed protein
LOC_Os04g33620OsAffx.30606.2.S1_x_at11/114+20176783..20177366hypothetical protein
LOC_Os04g33630Os.49129.1.S1_at11/114+20178236..20181835Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os04g33630Os.52100.1.S1_at1/114+20178236..20181835Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os04g33640Os.24051.1.S1_x_at11/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.47778.1.A1_s_at11/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.24051.1.S1_at11/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.24051.2.S1_at10/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.47778.1.A1_at1/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33650OsAffx.26310.1.S1_at9/114+20193522..20196598expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49564.1.S1_at--292--4071Chr04:20171689..20171713 (25 bp)
CGAGGAGGACGATGGCCTGCAGGGC
LOC_Os04g33610
Os.49564.1.S1_at--900--2411Chr04:20171974..20171998 (25 bp)
AAAAAAGCTGCTCCTGATTATCGAG
LOC_Os04g33610
Os.49564.1.S1_at--474--4771Chr04:20171980..20172004 (25 bp)
GCTGCTCCTGATTATCGAGCTTGAT
LOC_Os04g33610
Os.49564.1.S1_at--1076--511Chr04:20171993..20172017 (25 bp)
ATCGAGCTTGATTACTAGCAGCGCT
LOC_Os04g33610
Os.49564.1.S1_at--325--4171Chr04:20172066..20172090 (25 bp)
CGCCTTCTTTTTTTGCTCAAATAAG
LOC_Os04g33610
Os.49564.1.S1_at--702--1331Chr04:20172089..20172113 (25 bp)
AGAGATATTACCCTTCTTGTTTCCG
LOC_Os04g33610
Os.49564.1.S1_at--1080--6491Chr04:20172092..20172116 (25 bp)
GATATTACCCTTCTTGTTTCCGAGT
LOC_Os04g33610
Os.49564.1.S1_at--531--9951Chr04:20172097..20172121 (25 bp)
TACCCTTCTTGTTTCCGAGTTGTGA
LOC_Os04g33610
Os.49564.1.S1_at--722--2391Chr04:20172145..20172169 (25 bp)
AAACTTCTAATTCTGATGATAGTGT
LOC_Os04g33610
Os.49564.1.S1_at--1142--10471Chr04:20172173..20172197 (25 bp)
TTACATTTACTGATTTACACATATA
LOC_Os04g33610
Os.49564.1.S1_at--1102--2171Chr04:20172189..20172213 (25 bp)
ACACATATATGAGCTTTCCCTGCAT
LOC_Os04g33610
Target Sequence 
CGAGGAGGACGATGGCCTGCAGGGCGAGAGCGCGCGGGAGAGGCTGAAGCGGCACNNGCGGGAGATGGCCGGGAGGNTNT
GGGTNCCGGACATGTGGGNGCAGGNAGAAGCTGCTCAAGGACTGGGTGNACTNCNCCGCCNTTCNNCCGCCCGCTCNGTG
CCGCCCGACCTGCTCACGGCGCNCCGGGCGCTCGTCGCCGAGTGCTGCGCGCNCCGCCCGGACCGGACGACGACGCCGCC
CGGACCGGACGACGACGCCGCCCGCCAGATCCAGCNCTCTCCGGGNGCAAAAAAGCTGCTCCTGATTATCGAGCTTGATT
ACTAGCAGCGCTNTCAATTCGCCTCCAGCTTCACTAGCCATATTNAGCTANCCNGCGNTGCATACGCCTTCTTTTTTTGC
TCAAATAAGAGATATTACCCTTCTTGTTTCCGAGTTGTGANGGTCCTTTTTTTTTCCTGTTCTAAACTTCTAATTCTGAT
GATAGTGTGAATTACATTTACTGATTTACACATATATGAGCTTTCCCTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49564.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis