Browse Element(s) Details


Os.13584.1.S1_at

Description gb:AK102032.1
DB_XREF= gi:32987241
TID=Os.13584.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13584 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033081A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033081A11, full insert sequence.
FL= gb:AK102032.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3359011/11hydrolase, alpha/beta fold family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33570Os.8120.1.S1_at11/114+20131641..20133997CEN-like protein 2, putative, expressed
LOC_Os04g33580OsAffx.4202.1.S1_at1/114+20140009..20141016hypothetical protein
LOC_Os04g33590Os.13584.1.S1_at11/114+20151565..20157670hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os04g33600NANA4+20161138..20165762hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os04g33610Os.49564.1.S1_at11/114+20171268..20172240expressed protein
LOC_Os04g33620OsAffx.30606.2.S1_x_at11/114+20176783..20177366hypothetical protein
LOC_Os04g33630Os.49129.1.S1_at11/114+20178236..20181835Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os04g33630Os.52100.1.S1_at1/114+20178236..20181835Ferredoxin-3, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13584.1.S1_at--74--1691Chr04:20157199..20157223 (25 bp)
AGCCTGTCCAGGTACCTAAGCGAGA
LOC_Os04g33590
Os.13584.1.S1_at--825--9771Chr04:20157215..20157239 (25 bp)
TAAGCGAGAAGCTGCCCTGGGTCGT
LOC_Os04g33590
Os.13584.1.S1_at--735--8851Chr04:20157343..20157367 (25 bp)
TGATCCTGATTCGAACTCTGGTCCT
LOC_Os04g33590
Os.13584.1.S1_at--93--2991Chr04:20157379..20157403 (25 bp)
AATGTGGAGTGCGTTTCTTGGTGCT
LOC_Os04g33590
Os.13584.1.S1_at--886--31Chr04:20157426..20157450 (25 bp)
ATTGACAGCGTAGTTAATCGGCCGG
LOC_Os04g33590
Os.13584.1.S1_at--426--10491Chr04:20157439..20157463 (25 bp)
TTAATCGGCCGGTCGTCAGTAAAAG
LOC_Os04g33590
Os.13584.1.S1_at--193--2591Chr04:20157539..20157563 (25 bp)
AACGTCTTGTTTTCCTATTGGCTCA
LOC_Os04g33590
Os.13584.1.S1_at--763--10871Chr04:20157556..20157580 (25 bp)
TTGGCTCACCTGAAGTGCATCATGC
LOC_Os04g33590
Os.13584.1.S1_at--976--8971Chr04:20157583..20157607 (25 bp)
TGAACTTGTTTTCCTACTGGCTGCA
LOC_Os04g33590
Os.13584.1.S1_at--611--7852Chr04:20157615..20157639 (25 bp)
GGTAGCTTGCTTGTTGAGTTCAACT
LOC_Os04g33590
Os.13584.1.S1_at--667--9191Chr04:20157639..20157663 (25 bp)
TGCCACTGATCCTCGTTAATTGCAG
LOC_Os04g33590
Target Sequence 
AGCCTGTCCAGGTACCTAAGCGAGAAGCTGCCCTGGGTCGTCTACCACGAGCTCCCCAAGTCCGGCCACATGTTCCCGCT
CGCCGACGGGATGGCCGATACCATCGTCAAGTCGCTGCTGCTCGGCGATCAGCCACCTCAGGCCTGATCCTGATTCGAAC
TCTGGTCCTCCCCGTTCACCAATGTGGAGTGCGTTTCTTGGTGCTTCGTTAAGTACATATTGCTGGCATTGACAGCGTAG
TTAATCGGCCGGTCGTCAGTAAAAGAAAAGCAGTTCGTTGATTATACTGTTGTGGTTGTATCTTCACTGAATTTTTCATC
CGATATCTGGATAGTTTATCAACGTCTTGTTTTCCTATTGGCTCACCTGAAGTGCATCATGCGGTGAACTTGTTTTCCTA
CTGGCTGCAGTGATGAGGTAGCTTGCTTGTTGAGTTCAACTGCCACTGATCCTCGTTAATTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13584.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis