Browse Element(s) Details


Os.47778.1.A1_at

Description gb:AU174633
DB_XREF= gi:13420543
DB_XREF=AU174633
CLONE=F10150
TID=Os.47778.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.47778 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g336401/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33600NANA4+20161138..20165762hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os04g33610Os.49564.1.S1_at11/114+20171268..20172240expressed protein
LOC_Os04g33620OsAffx.30606.2.S1_x_at11/114+20176783..20177366hypothetical protein
LOC_Os04g33630Os.49129.1.S1_at11/114+20178236..20181835Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os04g33630Os.52100.1.S1_at1/114+20178236..20181835Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os04g33640Os.24051.1.S1_x_at11/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.47778.1.A1_s_at11/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.24051.1.S1_at11/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.24051.2.S1_at10/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.47778.1.A1_at1/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33650OsAffx.26310.1.S1_at9/114+20193522..20196598expressed protein
LOC_Os04g33660Os.24816.1.A1_at11/114+20200327..20202617Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os04g33670Os.55574.1.S1_at11/114+20204614..20205695expressed protein
LOC_Os04g33680Os.47985.1.S1_at11/114+20206158..20207892Glutaredoxin family protein, expressed
LOC_Os04g33690Os.53585.1.S1_at11/114+20210709..20218358Sec23/Sec24 trunk domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47778.1.A1_at--925--3931NONE
CGGACGTGTTACGTCTTGTGCGCGT
NONE
Os.47778.1.A1_at--279--1911NONE
ACGTGTTACGTCTTGTGCGCGTGTT
NONE
Os.47778.1.A1_at--978--8751NONE
TGTTACGTCTTGTGCGCGTGTTCAA
NONE
Os.47778.1.A1_at--683--6771NONE
GTTACGTCTTGTGCGCGTGTTCAAC
NONE
Os.47778.1.A1_at--43--7151NONE
GTCTTGTGCGCGTGTTCAACGAGCA
NONE
Os.47778.1.A1_at--93--9591NONE
TCTTGTGCGCGTGTTCAACGAGCAC
NONE
Os.47778.1.A1_at--1096--10811NONE
TTGTGCGCGTGTTCAACGAGCACCT
NONE
Os.47778.1.A1_at--983--9151NONE
TGCGCGTGTTCAACGAGCACCTCAA
NONE
Os.47778.1.A1_at--371--4571NONE
GCGCGTGTTCAACGAGCACCTCAAC
NONE
Os.47778.1.A1_at--237--7411NONE
GTGTTCAACGAGCACCTCAACCCGG
NONE
Os.47778.1.A1_at--8--10031Chr04:20189781..20190060 (25 bp)
TAGAAGAAAGCAAGGGATGCTTCGG
LOC_Os04g33640
Target Sequence 
CGGACGTGTTACGTCTTGTGCGCGTGTTCAACGAGCACCTCAACCCGGGGCCCGACATCCGAGAGANACNTACNGGCTGN
TTCTACCCCGNCGGCACGCCGGTNTACGACGTCGNNCTGCGCNGGTATCTCCCGCCGATGGACGAATCGAAAAGCGCNCG
AAAGGCGGTTTCANTGTTAGCTCTCATCGCCATTGCATCGATCACTCTCATCTNATCCTGAGAGTATATACTTTTGTCCA
GTTCAGTAAAGTAGAGTAAAGGTGCAGCATCTCTTGCTGCTGAAGATTCCCATAGAAGAAAGCAAGGGATGCTTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47778.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis