Browse Element(s) Details


Os.53824.1.S1_x_at

Description gb:AK100280.1
DB_XREF= gi:32985489
TID=Os.53824.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53824 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023074E23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023074E23, full insert sequence.
FL= gb:AK100280.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5168011/11Ubiquitin ligase protein FANCL, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51660OsAffx.25680.1.S1_at10/113+29533678..29535394hypothetical protein
LOC_Os03g51670Os.54070.1.S1_at11/113+29536489..29541868serine esterase family protein, expressed
LOC_Os03g51680Os.53824.1.S1_x_at11/113+29543527..29546348Ubiquitin ligase protein FANCL, putative, expressed
LOC_Os03g51680Os.53425.1.S1_at10/113+29543527..29546348Ubiquitin ligase protein FANCL, putative, expressed
LOC_Os03g51690Os.151.2.S1_at11/113+29546838..29557422Homeobox protein OSH1, putative, expressed
LOC_Os03g51690Os.151.1.S1_x_at10/113+29546838..29557422Homeobox protein OSH1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53824.1.S1_x_at--193--2571Chr03:29544298..29544322 (25 bp)
AACTGTCTTGGATTTCGCTTTGCCT
LOC_Os03g51680
Os.53824.1.S1_x_at--328--8791Chr03:29544222..29544246 (25 bp)
TGTTATGCCAAGCATCTGCCAATTG
LOC_Os03g51680
Os.53824.1.S1_x_at--869--771Chr03:29544062..29544086 (25 bp)
ATGTGAAAACCCGAGCTGCAGCAGA
LOC_Os03g51680
Os.53824.1.S1_x_at--1018--3671Chr03:29544036..29544060 (25 bp)
CTTTCCATTCTGTCTGCCTGAGAGA
LOC_Os03g51680
Os.53824.1.S1_x_at--800--6011Chr03:29544017..29544041 (25 bp)
GAGAGACTGGTTACGCGCGATTACT
LOC_Os03g51680
Os.53824.1.S1_x_at--975--2931Chr03:29543860..29544011 (25 bp)
AAGGCAGTCGTTCGACGTTCTGTTT
LOC_Os03g51680
Os.53824.1.S1_x_at--331--1611Chr03:29543817..29543841 (25 bp)
AGCGACCCTGTTGCCGTGAAGATCA
LOC_Os03g51680
Os.53824.1.S1_x_at--223--5351Chr03:29543800..29543824 (25 bp)
GAAGATCACCGACCGCTAAAACAGT
LOC_Os03g51680
Os.53824.1.S1_x_at--120--191Chr03:29543763..29543787 (25 bp)
ATTTCAGCTGATTCTAACCACTCGT
LOC_Os03g51680
Os.53824.1.S1_x_at--589--1711Chr03:29543747..29543771 (25 bp)
ACCACTCGTGAGACCATTACTAACT
LOC_Os03g51680
Os.53824.1.S1_x_at--1006--10051Chr03:29543723..29543747 (25 bp)
TAGTCAGTTGCCATGTACAGTGTTA
LOC_Os03g51680
Target Sequence 
AACTGTCTTGGATTTCGCTTTGCCTCCACCACCTTCAGTCAACATCGAAGATGACGAGCAAGTTGATTGTGGAATATGTT
ATGCCAAGCATCTGCCAATTGATGATGAACTTGGGACTCACAGCGGGGGCACGACAGATTACACATGTGAAAACCCGAGC
TGCAGCAGAGCTTTCCATTCTGTCTGCCTGAGAGACTGGTTACGCGCGATTACTACAACAAGGCAGTCGTTCGACGTTCT
GTTTGGGAACTGCCCCTACTGCAGCGACCCTGTTGCCGTGAAGATCACCGACCGCTAAAACAGTCTTCAGAGGCAGATTT
CAGCTGATTCTAACCACTCGTGAGACCATTACTAACTAGTCAGTTGCCATGTACAGTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53824.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis