Browse Element(s) Details


Os.53828.1.S1_at

Description gb:AK100297.1
DB_XREF= gi:32985506
TID=Os.53828.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53828 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023077B14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023077B14, full insert sequence.
FL= gb:AK100297.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4172011/11Auxin Efflux Carrier family protein
LOC_Os01g328301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41670Os.57148.1.S1_at10/118+26174601..26177536Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os08g41680OsAffx.17462.1.S1_at10/118+26179517..26180997expressed protein
LOC_Os08g41690Os.54259.1.S1_at11/118+26181912..26184983expressed protein
LOC_Os08g41700Os.50600.1.S1_at11/118+26186430..26189682expressed protein
LOC_Os08g41710Os.6151.1.S1_at11/118+26192162..26195774FHA domain containing protein, expressed
LOC_Os08g41720Os.53828.1.S1_at11/118+26199096..26202882Auxin Efflux Carrier family protein
LOC_Os08g41730Os.53150.1.S1_at10/118+26209510..26211681Proteasome subunit beta type 1, putative, expressed
LOC_Os08g41740OsAffx.6107.1.S1_at11/118+26212027..26214380hypothetical protein
LOC_Os08g41750OsAffx.17463.1.S1_at11/118+26218338..26219453F-box domain containing protein
LOC_Os08g41760OsAffx.6108.1.S1_at11/118+26223352..26224461F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007389biological_processpattern specification
GO:0009606biological_processtropism
GO:0009630biological_processgravitropism
GO:0009723biological_processresponse to ethylene stimulus
GO:0009733biological_processresponse to auxin stimulus
GO:0009926biological_processauxin polar transport
GO:0009958biological_processpositive gravitropism
GO:0010082biological_processregulation of root meristem size
GO:0048364biological_processroot development
GO:0005886cellular_componentplasma membrane
GO:0009706cellular_componentchloroplast inner membrane
GO:0009925cellular_componentbasal plasma membrane
GO:0012506cellular_componentvesicle membrane
GO:0016328cellular_componentlateral plasma membrane
GO:0005215molecular_functiontransporter activity
GO:0009672molecular_functionauxin:hydrogen symporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53828.1.S1_at--293--3051Chr08:26199753..26199777 (25 bp)
AATCGATTGCTTCCTTCGTTTTCGC
LOC_Os08g41720
Os.53828.1.S1_at--210--7591Chr08:26199718..26199742 (25 bp)
GGGCTTCATGCCGATGTACTCAGCA
LOC_Os08g41720
Os.53828.1.S1_at--478--9651Chr08:26199535..26199723 (25 bp)
TCAGCACGGCGGTTATATTCGGAAC
LOC_Os08g41720
Os.53828.1.S1_at--7--10231Chr08:26199520..26199544 (25 bp)
TATTCGGAACATTGATCTCTCTGCC
LOC_Os08g41720
Os.53828.1.S1_at--939--6411Chr08:26199507..26199531 (25 bp)
GATCTCTCTGCCGATTCTGATTGCA
LOC_Os08g41720
Os.53828.1.S1_at--85--6591Chr08:26199489..26199513 (25 bp)
GATTGCATATTACGCGGTTCTGGGC
LOC_Os08g41720
Os.53828.1.S1_at--776--7891Chr08:26199474..26199498 (25 bp)
GGTTCTGGGCTTTGTCTAACATGCA
LOC_Os08g41720
Os.53828.1.S1_at--125--5111Chr08:26199443..26199467 (25 bp)
GCACGGCATGCTTACTTATATTAGA
LOC_Os08g41720
Os.53828.1.S1_at--323--10433Chr08:26199397..26199421 (25 bp)
TTATCTCGAGATACCGATACCTCAC
LOC_Os08g41720
Os.53828.1.S1_at--420--9971Chr08:26199370..26199394 (25 bp)
TACCGATAACTCATCTGCTCAGCTA
LOC_Os08g41720
Os.53828.1.S1_at--898--6112Chr08:26199314..26199338 (25 bp)
GAGGTACCGGTATTTCGAGATACTT
LOC_Os08g41720
Target Sequence 
AATCGATTGCTTCCTTCGTTTTCGCAAAGGAGTATGGGCTTCATGCCGATGTACTCAGCACGGCGGTTATATTCGGAACA
TTGATCTCTCTGCCGATTCTGATTGCATATTACGCGGTTCTGGGCTTTGTCTAACATGCATTTACAGCACGGCATGCTTA
CTTATATTAGATTTGCTTCGGTCCAACAAAAATTATCTCGAGATACCGATACCTCACGGTACCGATAACTCATCTGCTCA
GCTAGATCCAACGATCGAAAATAATTTGGTACCGTGAGGTACCGGTATTTCGAGATACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53828.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis