Browse Element(s) Details


Os.53857.1.S2_at

Description gb:AK100434.1
DB_XREF= gi:32985643
TID=Os.53857.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53857 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033111K13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088J01, full insert sequence.
FL= gb:AK100434.1 gb:AK102863.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5767010/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57640Os.53757.1.S1_at11/114+34095289..34101017Poly polymerase catalytic domain containing protein, expressed
LOC_Os04g57650Os.23656.1.A1_at9/114+34102288..34105685expressed protein
LOC_Os04g57660Os.52985.1.S1_at11/114+34110677..34113143Leucine Rich Repeat family protein, expressed
LOC_Os04g57670Os.53857.1.S1_at11/114+34114436..34117606pentatricopeptide, putative, expressed
LOC_Os04g57670Os.53857.1.S2_at10/114+34114436..34117606pentatricopeptide, putative, expressed
LOC_Os04g57680Os.46068.1.S1_at11/114+34119412..34122849expressed protein
LOC_Os04g57690Os.51223.1.S1_at11/114+34123545..34126566expressed protein
LOC_Os04g57700Os.8444.1.S1_a_at11/114+34127493..34133264expressed protein
LOC_Os04g57700Os.8444.1.S1_s_at11/114+34127493..34133264expressed protein
LOC_Os04g57700Os.36208.1.S1_at8/114+34127493..34133264expressed protein
LOC_Os04g57710NANA4+34134913..34135389hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53857.1.S2_at--341--2651Chr04:34114994..34115018 (25 bp)
AACCACAGGTATTATGACATGCGGC
LOC_Os04g57670
Os.53857.1.S2_at--733--8951Chr04:34114980..34115004 (25 bp)
TGACATGCGGCACCTAACCATATAG
LOC_Os04g57670
Os.53857.1.S2_at--831--2592Chr04:34114930..34114954 (25 bp)
AACCCTACCCTTATGCATTTTGAGC
LOC_Os04g57670
Os.53857.1.S2_at--402--4951Chr04:34114916..34114940 (25 bp)
GCATTTTGAGCACAGATTACTTACA
LOC_Os04g57670
Os.53857.1.S2_at--1113--6491Chr04:34114795..34114819 (25 bp)
GATATGCAAAATTAGGCCTAGTTCT
LOC_Os04g57670
Os.53857.1.S2_at--757--8411Chr04:34114781..34114805 (25 bp)
GGCCTAGTTCTATTTTTCAACTTCA
LOC_Os04g57670
Os.53857.1.S2_at--1150--694Chr05:28012265..28012531 (25 bp)
ATGAGATTTCTCGTTTTGCGTCAAA
NONE
Os.53857.1.S2_at--309--9031Chr04:34114589..34114613 (25 bp)
TGCGTCAAAAATCTATCTGCCAAAC
LOC_Os04g57670
Os.53857.1.S2_at--573--471Chr04:34114575..34114599 (25 bp)
ATCTGCCAAACGGATGATCAAACGG
LOC_Os04g57670
Os.53857.1.S2_at--681--8671Chr04:34114485..34114509 (25 bp)
TGTGTGCCACACATCATAATATATG
LOC_Os04g57670
Os.53857.1.S2_at--827--2291Chr04:34114436..34114460 (25 bp)
AAATGTGAGATTTTCTGAGTTAGCT
NONE
Target Sequence 
AACCACAGGTATTATGACATGCGGCACCTAACCATATAGGTATAACAGTTCTAAAGTTTGACAAAACCCTACCCTTATGC
ATTTTGAGCACAGATTACTTACAATTCTAAATCATAGTGTGTACATGAAAATTTTAATTTTTAAGTTCTTGACTAAGGTT
GATAATTAAAATTTTTACTAATTCAAAAGAATTGTTCAAGATATGCAAAATTAGGCCTAGTTCTATTTTTCAACTTCAAA
CTTCAACTTTCTCGTTTTCCGTTAGCACGCTTTTCAAACCGTTAAATGGTGCGTTTTTTAAAAAAGTTTTTATACATAAG
TTGTTTAAAAAAGCAAATAAATTCATTTTTGAAATTTATAATACTTAATACTTAATTGATCATGTGCTAATGAGATTTCT
CGTTTTGCGTCAAAAATCTATCTGCCAAACGGATGATCAAACGGGGCCTTAATCAAGATTTCAATAAATGTGGGGTTTTA
TGAAATATTTAGACCATAATACATGTGGTTGTGTGCCACACATCATAATATATGTGGTTTTCTGCAACTTTGATCATAAA
ATGTGAGATTTTCTGAGTTAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53857.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis