Browse Element(s) Details


Os.53895.1.S1_at

Description gb:AK100673.1
DB_XREF= gi:32985882
TID=Os.53895.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53895 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023112P17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023112P17, full insert sequence.
FL= gb:AK100673.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2043011/11Pre-SET motif family protein, expressed
LOC_Os07g206701/11retrotransposon protein, putative, unclassified
LOC_Os02g121401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20390OsAffx.25164.1.S1_at11/113+11520292..11520716hypothetical protein
LOC_Os03g20400OsAffx.25165.1.S1_at10/113+11521834..11522300hypothetical protein
LOC_Os03g20400OsAffx.8723.1.S1_at1/113+11521834..11522300hypothetical protein
LOC_Os03g20410Os.53172.1.S1_at11/113+11525413..11527917aquaporin SIP2.1, putative, expressed
LOC_Os03g20420Os.10578.1.A1_at11/113+11528342..11537173Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os03g20420Os.53962.1.S1_at1/113+11528342..11537173Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os03g20430Os.53895.1.S1_at11/113+11538995..11541397Pre-SET motif family protein, expressed
LOC_Os03g20440Os.18622.1.S1_at11/113+11547303..11548353VQ motif family protein, expressed
LOC_Os03g20450Os.49215.1.S1_at11/113+11564133..11568807Leucine Rich Repeat family protein, expressed
LOC_Os03g20450Os.49215.1.S2_at6/113+11564133..11568807Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0042054molecular_functionhistone methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53895.1.S1_at--721--231Chr03:11540815..11540839 (25 bp)
ATATTTGAGGTTACTAGACCAGAGC
LOC_Os03g20430
Os.53895.1.S1_at--972--9771Chr03:11540861..11540885 (25 bp)
TACCAGAATTGATAGGTGAACCTTC
LOC_Os03g20430
Os.53895.1.S1_at--517--7771Chr03:11540875..11540899 (25 bp)
GGTGAACCTTCTTTCTATGACATGA
LOC_Os03g20430
Os.53895.1.S1_at--814--6213Chr04:11546755..11546779 (25 bp)
GAGGCGGAGATCAAGTTCGGAAACA
NONE
Os.53895.1.S1_at--68--3231Chr03:11540993..11541017 (25 bp)
CAAGTTCGGAAACAGAGCAGGGATT
LOC_Os03g20430
Os.53895.1.S1_at--272--3911Chr03:11541020..11541044 (25 bp)
CTGGAGTCCAGATTAGCTACGATAA
LOC_Os03g20430
Os.53895.1.S1_at--205--97919Chr07:12861074..12861098 (25 bp)
TAAGATCGGCTGAGTCTGAGTCGGA
NONE
Os.53895.1.S1_at--350--36712Chr12:12609635..12609659 (25 bp)
CGGACTAGGTAAGCCGATGTAGCCG
NONE
Os.53895.1.S1_at--533--42310Chr06:25038999..25039023 (25 bp)
CCGATCCTAGCAATACAACTTGATG
NONE
Os.53895.1.S1_at--83--22117Chr12:21163308..21163332 (25 bp)
ACAACTTGATGTGTGATGTCGGGTT
NONE
Os.53895.1.S1_at--426--58751Chr12:21163543..21163567 (25 bp)
GAGCCCTATGTAACTTTTAACACAC
NONE
Target Sequence 
ATATTTGAGGTTACTAGACCAGAGCATAATTTAAAATGGAACTATTTACCAGAATTGATAGGTGAACCTTCTTTCTATGA
CATGAATGATACATTCAAGAAGTTGTGTTAACAACCAAATTTGGTAATATCGGCATTGGGAAAGAAGATTAGATTGAAGC
GAAGTCGGAGGCGGAGATCAAGTTCGGAAACAGAGCAGGGATTGGCTGGAGTCCAGATTAGCTACGATAAGATCGGCTGA
GTCTGAGTCGGACTAGGTAAGCCGATGTAGCCGATCCTAGCAATACAACTTGATGTGTGATGTCGGGTTGGATTGAGGTG
CTTCAAGGTGATTGCCGCACATGGATAGAGTCCTGAGGGGGCAATTGTATCTATTAGTTAGGATGTTTTATGTAATTTCC
TTAGAGATATGATTGGGCAAAAGTCTGCCGCAAAGACTTATAGTATCTTAGAGTTTGTTAGAGATAGTAGTCGTGTCCGT
TATGGACATATCTTGTAATTCTCGGGTATAAATATACCCGAGCCCTATGTAACTTTTAACACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53895.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis