Browse Element(s) Details


Os.53933.1.S1_at

Description gb:AK100896.1
DB_XREF= gi:32986105
TID=Os.53933.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53933 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023131C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023131C09, full insert sequence.
FL= gb:AK100896.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2345011/11expressed protein
LOC_Os05g236601/11transposon protein, putative, Pong sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23430NANA5+13307596..13312457expressed protein
LOC_Os05g23440Os.47824.1.S1_at11/115+13327246..13332725anthocyanin-related membrane protein 1, putative, expressed
LOC_Os05g23450Os.53933.1.S1_at11/115+13332955..13335908expressed protein
LOC_Os05g23460Os.50619.1.S1_at1/115+13336082..13339026hypothetical protein
LOC_Os05g23460Os.47824.1.S1_at1/115+13336082..13339026hypothetical protein
LOC_Os05g23460Os.50619.1.S1_x_at1/115+13336082..13339026hypothetical protein
LOC_Os05g23470Os.18025.1.S1_at11/115+13343520..13345932AN1-like Zinc finger family protein, expressed
LOC_Os05g23480OsAffx.26981.1.S1_at11/115+13351667..13352839hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53933.1.S1_at--426--251Chr05:13333514..13333538 (25 bp)
ATATCTAATGCTACTACCATCGATG
LOC_Os05g23450
Os.53933.1.S1_at--759--1731Chr05:13333499..13333523 (25 bp)
ACCATCGATGTTGTGTTCTGACTAA
LOC_Os05g23450
Os.53933.1.S1_at--235--10072Chr05:13491935..13491956 (22 bp)
TAGTGCTGGCATCCTTTTTTATTTG
LOC_Os05g23660
Os.53933.1.S1_at--723--7151Chr05:13333395..13333419 (25 bp)
GTCTCCCTATGATCTCTATTTACTA
LOC_Os05g23450
Os.53933.1.S1_at--917--6931Chr05:13333370..13333394 (25 bp)
GTAGTGCGGTATTGTATCCTGCAAT
LOC_Os05g23450
Os.53933.1.S1_at--768--10271Chr05:13333312..13333336 (25 bp)
TTTCCTAAGCTCAACGAGTGGCCAG
LOC_Os05g23450
Os.53933.1.S1_at--375--6711Chr05:13333182..13333206 (25 bp)
GTATCGCCTAGGGATGGCCTTTTAA
LOC_Os05g23450
Os.53933.1.S1_at--885--8515Chr12:7188210..7188314 (25 bp)
TGGAATGGCATTTGAGCGAAACCCT
NONE
Os.53933.1.S1_at--1017--4593Chr12:1961554..1961578 (25 bp)
GCGAAACCCTCTTTTGGTAGTGGCA
NONE
Os.53933.1.S1_at--377--7271Chr05:13333100..13333124 (25 bp)
GTCCAATTTCTCGTTTCGTTCAACA
LOC_Os05g23450
Os.53933.1.S1_at--653--4871Chr05:13332998..13333022 (25 bp)
GCTATTGTGACCTGTCTGGCTGACA
LOC_Os05g23450
Target Sequence 
ATATCTAATGCTACTACCATCGATGTTGTGTTCTGACTAATATTAGTGCTGGCATCCTTTTTTATTTGTTTATATTTTAT
CTGAATAAGAGATGACTTAGAATATTGTTGTAAGAGATGGTCTCCCTATGATCTCTATTTACTAGTAGTGCGGTATTGTA
TCCTGCAATGGTAGATTCTAAAATTAACTGAATTTAGTCCCCTTTCCTAAGCTCAACGAGTGGCCAGGAGGGCTGAGGTA
GAAGAACCCGACTGAAGGGGTATATTGGTCAACCCAAGTAAAAAAATGGTGGAAATCCAGTGAATTGGCAAATATGGCAA
AGAAAAGGTTTGGTATCGCCTAGGGATGGCCTTTTAACGAATCCAATCCGTGGAATGGCATTTGAGCGAAACCCTCTTTT
GGTAGTGGCAGAATGTCCAATTTCTCGTTTCGTTCAACACAATTGTGTGTTACTGAAAACATGTGTGATGTTTGGAATTT
CAGTTCAAGGTGTTGATAATCACCTCCTACCCTGTTGCTATTGTGACCTGTCTGGCTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53933.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis