Browse Element(s) Details


Os.5394.1.S1_at

Description gb:AK059096.1
DB_XREF= gi:32969114
TID=Os.5394.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5394 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-022-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-C05, full insert sequence.
FL= gb:AK059096.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g359001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35860Os.49782.1.S1_at11/119+20637344..20639287Ras-related protein Rab11B, putative, expressed
LOC_Os09g35870Os.57199.1.S1_at11/119+20640984..20642658Auxin-induced protein 22B, putative, expressed
LOC_Os09g35880Os.10164.1.S1_at11/119+20645934..20649503B-box zinc finger family protein, expressed
LOC_Os09g35890Os.23742.1.S1_at11/119+20654226..20658702kinesin motor family protein, putative, expressed
LOC_Os09g35900Os.5394.1.S1_at1/119+20659309..20659557expressed protein
LOC_Os09g35910Os.2363.1.S1_a_at11/119+20671508..20672799Homeobox domain containing protein, expressed
LOC_Os09g35920Os.49331.1.S1_at11/119+20673353..20678159expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5394.1.S1_at--765--7851Chr09:20659439..20659463 (25 bp)
GGTTCAAGGGCTCCTACGGCAACGC
LOC_Os09g35900
Os.5394.1.S1_at--667--9611Chr09:20659550..20659574 (25 bp)
TCATCTGAGCCAAAGCCCAGCGCGA
NONE
Os.5394.1.S1_at--198--11Chr09:20659583..20659607 (25 bp)
CCGTCGGTTCGTGAGGCTACCTAGG
NONE
Os.5394.1.S1_at--25--9431Chr09:20659591..20659615 (25 bp)
TCGTGAGGCTACCTAGGGTTTTCCT
NONE
Os.5394.1.S1_at--934--9271Chr09:20659617..20659641 (25 bp)
TCCCTTTTTCGATTTGGTACTCTTG
NONE
Os.5394.1.S1_at--792--4031Chr09:20659626..20659650 (25 bp)
CGATTTGGTACTCTTGTCCAACTCT
NONE
Os.5394.1.S1_at--424--9911Chr09:20659634..20659658 (25 bp)
TACTCTTGTCCAACTCTTGCGCCTG
NONE
Os.5394.1.S1_at--351--10051Chr09:20659692..20659716 (25 bp)
TAGTTCCTCATATTGGGCTGTGTCA
NONE
Os.5394.1.S1_at--420--8771Chr09:20659721..20659745 (25 bp)
TGTATTGTCGAATCAAGCTGCCATA
NONE
Os.5394.1.S1_at--724--2691Chr09:20659735..20659759 (25 bp)
AAGCTGCCATATCGCAACATTGTAG
NONE
Os.5394.1.S1_at--379--4111Chr09:20659747..20659771 (25 bp)
CGCAACATTGTAGAATGCAGTCCAT
NONE
Target Sequence 
GGTTCAAGGGCTCCTACGGCAACGCGCGGCCGAAGCGGGAGAAGAANGATCGAGCGCATCAAGGACCGCGTCGAGGTGCC
CCGCTCCACCCCGTGGCCGCTCCCCTTCAAGCTCATCTGAGCCAAAGCCCAGCGCGAGCTCCCCCCCGTCGGTTCGTGAG
GCTACCTAGGGTTTTCCTTTCCCTTTTTCGATTTGGTACTCTTGTCCAACTCTTGCGCCTGCGCCCACGCTTGCGTGGGC
ACGCNATCGTTTTTTTAGTTCCTCATATTGGGCTGTGTCANATATGTATTGTCGAATCAAGCTGCCATATCGCAACATTG
TAGAATGCAGTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5394.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis