Browse Element(s) Details


Os.10164.1.S1_at

Description gb:AK122172.1
DB_XREF= gi:37991818
TID=Os.10164.1
CNT=15
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.10164 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-002-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033148H23, full insert sequence.
FL= gb:AK122172.1 gb:AK058794.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3588011/11B-box zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35840Os.24098.1.S1_a_at4/119+20619099..20621316RNA-binding protein, putative
LOC_Os09g35840Os.56892.1.S1_x_at4/119+20619099..20621316RNA-binding protein, putative
LOC_Os09g35850Os.56892.1.S1_at11/119+20629236..20633047RNA recognition motif family protein, expressed
LOC_Os09g35850Os.56892.1.S1_x_at10/119+20629236..20633047RNA recognition motif family protein, expressed
LOC_Os09g35860Os.49782.1.S1_at11/119+20637344..20639287Ras-related protein Rab11B, putative, expressed
LOC_Os09g35870Os.57199.1.S1_at11/119+20640984..20642658Auxin-induced protein 22B, putative, expressed
LOC_Os09g35880Os.10164.1.S1_at11/119+20645934..20649503B-box zinc finger family protein, expressed
LOC_Os09g35890Os.23742.1.S1_at11/119+20654226..20658702kinesin motor family protein, putative, expressed
LOC_Os09g35900Os.5394.1.S1_at1/119+20659309..20659557expressed protein
LOC_Os09g35910Os.2363.1.S1_a_at11/119+20671508..20672799Homeobox domain containing protein, expressed
LOC_Os09g35920Os.49331.1.S1_at11/119+20673353..20678159expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009651biological_processresponse to salt stress
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10164.1.S1_at--111--2991Chr09:20646585..20646609 (25 bp)
AATGTGTCTGATGATCCAGCCTCAG
LOC_Os09g35880
Os.10164.1.S1_at--941--6371Chr09:20646516..20646540 (25 bp)
GATCTTAATATGAGACCCGTCCGTA
LOC_Os09g35880
Os.10164.1.S1_at--809--6751Chr09:20646369..20646503 (25 bp)
GTTCAAACTCACAGACTCAGGGCGT
LOC_Os09g35880
Os.10164.1.S1_at--754--9631Chr09:20646353..20646377 (25 bp)
TCAGGGCGTGGATGTTAGCGTCAAC
LOC_Os09g35880
Os.10164.1.S1_at--566--6571Chr09:20646322..20646346 (25 bp)
GATTCTCCAGGAGTGGTGCCAACAT
LOC_Os09g35880
Os.10164.1.S1_at--105--2091Chr09:20646248..20646272 (25 bp)
ACATTTCTTCGGTTGCTGCTATATA
LOC_Os09g35880
Os.10164.1.S1_at--960--231Chr09:20646228..20646252 (25 bp)
ATATAGCAGTAGCTCTCCGGGAGGT
LOC_Os09g35880
Os.10164.1.S1_at--832--131Chr09:20646200..20646224 (25 bp)
ATTAGCTTTGGTCTTCAGCCAGGCA
LOC_Os09g35880
Os.10164.1.S1_at--987--131Chr09:20646164..20646188 (25 bp)
ATTACATGGTCCTCTTGTGTCGCTA
LOC_Os09g35880
Os.10164.1.S1_at--97--2771Chr09:20646036..20646060 (25 bp)
AAGACTGGTGTCACATGGGCCATAC
LOC_Os09g35880
Os.10164.1.S1_at--264--7931Chr09:20645977..20646001 (25 bp)
GGATTGCTGCTGTGCGCTATTAGAA
LOC_Os09g35880
Target Sequence 
AATGTGTCTGATGATCCAGCCTCAGATGGCAACTGCGATGACCAGGGTAACATCGATTCCAAAATGATTGATCTTAATAT
GAGACCCGTCCGTACTCATGGACAAGGTTCAAACTCACAGACTCAGGGCGTGGATGTTAGCGTCAACAATCATGATTCTC
CAGGAGTGGTGCCAACATGTAATTTCGAACGAGAAGCCAACAAATAAATACCGTAACACCAGGATGTACATTTCTTCGGT
TGCTGCTATATAGCAGTAGCTCTCCGGGAGGTTGGATTAGCTTTGGTCTTCAGCCAGGCAGAATATGTGTTATTACATGG
TCCTCTTGTGTCGCTAGTAGTATGATTCTAGTAGAGCTGAAGTTGAACGAGTTCATGTCAACTCGGCATGCCATATGCCG
TGGACGCTATTTATCGTCGTGTACTCGTGTTGTGGTTGTAAGACTGGTGTCACATGGGCCATACGGGAAGCACAGTGGGC
TGTCACTTGTGCTTTTGTGGATTGCTGCTGTGCGCTATTAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10164.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis