Browse Element(s) Details


Os.56892.1.S1_at

Description gb:AK110546.1
DB_XREF= gi:32995755
TID=Os.56892.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56892 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-168-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-168-B09, full insert sequence.
FL= gb:AK110546.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3585011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35810Os.8734.1.S1_a_at11/119+20605389..20608644NC domain-containing protein, putative, expressed
LOC_Os09g35820NANA9+20609072..20610125hypothetical protein
LOC_Os09g35830NANA9+20613276..20613862hypothetical protein
LOC_Os09g35840Os.24098.1.S1_a_at4/119+20619099..20621316RNA-binding protein, putative
LOC_Os09g35840Os.56892.1.S1_x_at4/119+20619099..20621316RNA-binding protein, putative
LOC_Os09g35850Os.56892.1.S1_at11/119+20629236..20633047RNA recognition motif family protein, expressed
LOC_Os09g35850Os.56892.1.S1_x_at10/119+20629236..20633047RNA recognition motif family protein, expressed
LOC_Os09g35860Os.49782.1.S1_at11/119+20637344..20639287Ras-related protein Rab11B, putative, expressed
LOC_Os09g35870Os.57199.1.S1_at11/119+20640984..20642658Auxin-induced protein 22B, putative, expressed
LOC_Os09g35880Os.10164.1.S1_at11/119+20645934..20649503B-box zinc finger family protein, expressed
LOC_Os09g35890Os.23742.1.S1_at11/119+20654226..20658702kinesin motor family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56892.1.S1_at--199--1711Chr09:20632913..20632937 (25 bp)
ACCAAACTTGACTCTGATGCACCGT
LOC_Os09g35850
Os.56892.1.S1_at--923--2391Chr09:20632916..20632940 (25 bp)
AAACTTGACTCTGATGCACCGTTAG
LOC_Os09g35850
Os.56892.1.S1_at--369--2071Chr09:20632918..20632942 (25 bp)
ACTTGACTCTGATGCACCGTTAGTG
LOC_Os09g35850
Os.56892.1.S1_at--109--10751Chr09:20632920..20632944 (25 bp)
TTGACTCTGATGCACCGTTAGTGTT
LOC_Os09g35850
Os.56892.1.S1_at--863--5711Chr09:20632922..20632946 (25 bp)
GACTCTGATGCACCGTTAGTGTTGT
LOC_Os09g35850
Os.56892.1.S1_at--841--3771Chr09:20632924..20632948 (25 bp)
CTCTGATGCACCGTTAGTGTTGTAT
LOC_Os09g35850
Os.56892.1.S1_at--123--8871Chr09:20632927..20632951 (25 bp)
TGATGCACCGTTAGTGTTGTATGTT
LOC_Os09g35850
Os.56892.1.S1_at--964--9031Chr09:20632930..20632954 (25 bp)
TGCACCGTTAGTGTTGTATGTTGTT
LOC_Os09g35850
Os.56892.1.S1_at--350--8811Chr09:20632951..20632975 (25 bp)
TGTTGCTTTGCAAAGATTCTGCCGT
LOC_Os09g35850
Os.56892.1.S1_at--450--9071Chr09:20632954..20632978 (25 bp)
TGCTTTGCAAAGATTCTGCCGTGTA
LOC_Os09g35850
Os.56892.1.S1_at--740--9011Chr09:20632959..20632983 (25 bp)
TGCAAAGATTCTGCCGTGTAGGTTG
LOC_Os09g35850
Target Sequence 
ACCAAACTTGACTCTGATGCACCGTTAGTGTTGTATGTTGTTGCTTTGCAAAGATTCTGCCGTGTAGGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56892.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis