Browse Element(s) Details


Os.5395.1.S1_at

Description gb:AK065280.1
DB_XREF= gi:32975298
TID=Os.5395.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5395 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002L23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002L23, full insert sequence.
FL= gb:AK065280.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1226011/11CAPIP1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12250OsAffx.26852.1.S1_at11/115+6991999..6992671hypothetical protein
LOC_Os05g12260Os.5395.1.S1_at11/115+7013604..7015898CAPIP1, putative, expressed
LOC_Os05g12270OsAffx.26853.1.S1_at11/115+7019000..7019674hypothetical protein
LOC_Os05g12280OsAffx.4313.1.S1_at11/115+7029284..7030166expressed protein
LOC_Os05g12290OsAffx.10048.1.S1_x_at1/115+7035179..7039333retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5395.1.S1_at--1138--5831Chr05:7015378..7015402 (25 bp)
GACCAGGGACGCTTGTGATTGAATC
LOC_Os05g12260
Os.5395.1.S1_at--967--3051Chr05:7015399..7015423 (25 bp)
AATCATTTGTGGTGGACGTGCCTGA
LOC_Os05g12260
Os.5395.1.S1_at--43--2111Chr05:7015443..7015467 (25 bp)
ACATGCTACTTTGTCGAGGCCGTGA
LOC_Os05g12260
Os.5395.1.S1_at--20--4071Chr05:7015457..7015481 (25 bp)
CGAGGCCGTGATCAAGTGCAACTTA
LOC_Os05g12260
Os.5395.1.S1_at--4--2531Chr05:7015476..7015500 (25 bp)
AACTTAACATCTCTCGCCGAGGTAT
LOC_Os05g12260
Os.5395.1.S1_at--66--9651Chr05:7015500..7015524 (25 bp)
TCAGAGCGGCTAGCAGTTCAGTCAC
LOC_Os05g12260
Os.5395.1.S1_at--756--3791Chr05:7015529..7015553 (25 bp)
CTCGCCACTTGAACAGTAGGGTCAT
LOC_Os05g12260
Os.5395.1.S1_at--1146--10071Chr05:7015545..7015569 (25 bp)
TAGGGTCATCACTGGCACGGGACAT
LOC_Os05g12260
Os.5395.1.S1_at--465--10051Chr05:7015632..7015656 (25 bp)
TAGTTCCTCCATTGTCTTCGATATA
LOC_Os05g12260
Os.5395.1.S1_at--198--7151Chr05:7015645..7015669 (25 bp)
GTCTTCGATATATATGCCTCTTGTA
LOC_Os05g12260
Os.5395.1.S1_at--551--4711Chr05:7015870..7015894 (25 bp)
GCTGGCTTCCCATTGTAGTATAGTA
LOC_Os05g12260
Target Sequence 
GACCAGGGACGCTTGTGATTGAATCATTTGTGGTGGACGTGCCTGATGGAAATACAAAGGACGAGACATGCTACTTTGTC
GAGGCCGTGATCAAGTGCAACTTAACATCTCTCGCCGAGGTATCAGAGCGGCTAGCAGTTCAGTCACCCNCCTCGCCACT
TGAACAGTAGGGTCATCACTGGCACGGGACATGCGAACTGGCATGAATAAGAAGCTTCAAATGGTTGCTAGAGATTTAAA
TCTTTTTGAGATGGTAGTTCCTCCATTGTCTTCGATATATATGCCTCTTGTAAGGATTAGTATGTAGGGTTAATTATCTT
TAGTTGCTGGCTAGTNATGGNCTTAGGTCTTTTTAGGGACTNCACCTAGCTACCTTGTAGTTATGTATGCATACTGCTAG
TAGTATGTGTATAAATAGGGAANCATGGAGTGGTTTTTNCCTCTTTGGTGCACATGTGAAACANCCTCAAGAGTTCTTTT
TCCTNCATTTGAGCTGGCTTCCCATTGTAGTATAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5395.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis