Browse Element(s) Details


OsAffx.26853.1.S1_at

Description tigr:9633.m01094
TID=OsAffx.26853.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1227011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12260Os.5395.1.S1_at11/115+7013604..7015898CAPIP1, putative, expressed
LOC_Os05g12270OsAffx.26853.1.S1_at11/115+7019000..7019674hypothetical protein
LOC_Os05g12280OsAffx.4313.1.S1_at11/115+7029284..7030166expressed protein
LOC_Os05g12290OsAffx.10048.1.S1_x_at1/115+7035179..7039333retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g12300Os.26561.1.S1_at11/115+7041323..7045443expressed protein
LOC_Os05g12300Os.26561.1.S2_x_at11/115+7041323..7045443expressed protein
LOC_Os05g12300Os.26561.1.S2_at11/115+7041323..7045443expressed protein
LOC_Os05g12300Os.27790.2.A1_x_at4/115+7041323..7045443expressed protein
LOC_Os05g12300OsAffx.4936.1.S1_at1/115+7041323..7045443expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26853.1.S1_at--1069--8251Chr05:7019205..7019229 (25 bp)
GGCAGCGTCGGCAACGGATGACAAC
LOC_Os05g12270
OsAffx.26853.1.S1_at--531--2571Chr05:7019217..7019241 (25 bp)
AACGGATGACAACACCTCCTCCGAG
LOC_Os05g12270
OsAffx.26853.1.S1_at--375--9231Chr05:7019233..7019257 (25 bp)
TCCTCCGAGTTACCCGTATGTTCTT
LOC_Os05g12270
OsAffx.26853.1.S1_at--1126--1191Chr05:7019240..7019264 (25 bp)
AGTTACCCGTATGTTCTTTCTCTCT
LOC_Os05g12270
OsAffx.26853.1.S1_at--755--9431Chr05:7019264..7019288 (25 bp)
TCGGTGCACGATACCAGGCTGCGAG
LOC_Os05g12270
OsAffx.26853.1.S1_at--848--3931Chr05:7019420..7019444 (25 bp)
CGGCGGCAAGGCGACAGAAATCAGC
LOC_Os05g12270
OsAffx.26853.1.S1_at--902--4092Chr05:7019431..7019455 (25 bp)
CGACAGAAATCAGCGCTGGATGCCG
LOC_Os05g12270
OsAffx.26853.1.S1_at--1041--7851Chr05:7019524..7019548 (25 bp)
GGTTTTTCCCTCAGCACGGCCGCAA
LOC_Os05g12270
OsAffx.26853.1.S1_at--287--7191Chr05:7019583..7019607 (25 bp)
GTCGTGGTGGCGGAAATCAACATTG
LOC_Os05g12270
OsAffx.26853.1.S1_at--113--7631Chr05:7019608..7019632 (25 bp)
GGGAAAGGCGTGGTGCCCACAATTT
LOC_Os05g12270
OsAffx.26853.1.S1_at--667--7291Chr05:7019620..7019644 (25 bp)
GTGCCCACAATTTGCCAGTCAGTTT
LOC_Os05g12270
Target Sequence 
GGCAGCGTCGGCAACGGATGACAACACCTCCTCCGAGTTACCCGTATGTTCTTTCTCTCTCGGTGCACGATACCAGGCTG
CGAGCGGGAGGCCACGACGAAGCCCTCCCTCGCTGGCCCCTCTACCACCTCGTCTCCCATCTCACTGGCGCCGCCGCTTC
CTTCACGCCGCTGCCCCTCATCCCTTCTTCTCTCTCTTCGGCGCTCAAGAGGGCACGGCGGCAAGGCGACAGAAATCAGC
GCTGGATGCCGGCGGCGACAAGTGGGAGGCTGCGGCGACGCTCGCCGTCGTGCCGCCATGCCACCACATCCTCTTCCCTG
GTTTTTCCCTCAGCACGGCCGCAAGCGGATCTCGTGGCGACGGAAATCGGCGCGGGAGGTCGTGGTGGCGGAAATCAACA
TTGGGGAAAGGCGTGGTGCCCACAATTTGCCAGTCAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26853.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis