Browse Element(s) Details


Os.26561.1.S2_x_at

Description gb:AK100400.1
DB_XREF= gi:32985609
TID=Os.26561.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26561 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-122-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023086N14, full insert sequence.
FL= gb:AK100400.1 gb:AK107105.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1230011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12270OsAffx.26853.1.S1_at11/115+7019000..7019674hypothetical protein
LOC_Os05g12280OsAffx.4313.1.S1_at11/115+7029284..7030166expressed protein
LOC_Os05g12290OsAffx.10048.1.S1_x_at1/115+7035179..7039333retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g12300Os.26561.1.S1_at11/115+7041323..7045443expressed protein
LOC_Os05g12300Os.26561.1.S2_x_at11/115+7041323..7045443expressed protein
LOC_Os05g12300Os.26561.1.S2_at11/115+7041323..7045443expressed protein
LOC_Os05g12300Os.27790.2.A1_x_at4/115+7041323..7045443expressed protein
LOC_Os05g12300OsAffx.4936.1.S1_at1/115+7041323..7045443expressed protein
LOC_Os05g12310NANA5+7055799..7057673retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12320OsAffx.14656.1.S1_at11/115+7062200..7064348MtN3/saliva family protein, expressed
LOC_Os05g12330OsAffx.14657.1.S1_at11/115+7066396..7067821esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os05g12340Os.1709.1.S1_x_at11/115+7069879..7073434retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26561.1.S2_x_at--105--7831Chr05:7044954..7044978 (25 bp)
GGTACATGAAGAACAATCCGCCTGC
LOC_Os05g12300
Os.26561.1.S2_x_at--788--2091Chr05:7044957..7044981 (25 bp)
ACATGAAGAACAATCCGCCTGCAAA
LOC_Os05g12300
Os.26561.1.S2_x_at--207--671Chr05:7044959..7044983 (25 bp)
ATGAAGAACAATCCGCCTGCAAAAT
LOC_Os05g12300
Os.26561.1.S2_x_at--1008--691Chr05:7045185..7045209 (25 bp)
ATGTTATTTCCCTTTTGCCGACCTG
LOC_Os05g12300
Os.26561.1.S2_x_at--309--10371Chr05:7045188..7045212 (25 bp)
TTATTTCCCTTTTGCCGACCTGACA
LOC_Os05g12300
Os.26561.1.S2_x_at--154--10691Chr05:7045199..7045223 (25 bp)
TTGCCGACCTGACAGTAATAGAAGG
LOC_Os05g12300
Os.26561.1.S2_x_at--859--112Chr09:11046737..11046757 (21 bp)
ATTATTTCAAACTCAATCGCACGTA
NONE
Os.26561.1.S2_x_at--574--10511Chr05:7045247..7045271 (25 bp)
TTCAAACTCAATCGCACGTATGCAG
LOC_Os05g12300
Os.26561.1.S2_x_at--769--7852Chr05:7045301..7045325 (25 bp)
TGGTTTAAGTAGGTGGACCTACTCT
LOC_Os05g12300
Os.26561.1.S2_x_at--522--10071Chr05:7045310..7045334 (25 bp)
TAGGTGGACCTACTCTTGCTTCAAT
LOC_Os05g12300
Os.26561.1.S2_x_at--634--7432Chr05:7045404..7045428 (25 bp)
GTGTACCTTCCGGTTTCATGAAACA
LOC_Os05g12300
Target Sequence 
GGTACATGAAGAACAATCCGCCTGCAAAATCATTTCTATCAAACACATTCTTCACTTTTTATTCAAGAGCTAATAGACAA
ACCTTTCTNAAGACGTATCGTGTCTTGATGNCATCTATTTACATGTGTCCTGACCGGTTTCTTTACTTCCNAGAAANCAA
TCCTTTGCATAATAATATTTGTACAGNTTCCNNNGGAAANTATCCTTTTCAGAAANCNCTACTTTTCATTAGCCATGTTA
TTTCCCTTTTGCCGACCTGACAGTAATAGAAGGAAAAACAGTTGTAGTTTCATTATTTCAAACTCAATCGCACGTATGCA
GCTATATATATGGGCTATATATATGGGCTATGGTTTAAGTAGGTGGACCTACTCTTGCTTCAATCTTTCTTTGTGGTATA
GCATTTGAGAAACATTAGTTAGAATGTTGCATAAGTGTAGAATTGAAGAACTGGTGTACCTTCCGGTTTCATGAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26561.1.S2_x_at     

Putative homologies in rice

Putative homologies in arabidopsis