Browse Element(s) Details


OsAffx.14656.1.S1_at

Description tigr:9633.m01098
TID=OsAffx.14656.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=MtN3saliva family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1232011/11MtN3/saliva family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12290OsAffx.10048.1.S1_x_at1/115+7035179..7039333retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g12300Os.26561.1.S1_at11/115+7041323..7045443expressed protein
LOC_Os05g12300Os.26561.1.S2_x_at11/115+7041323..7045443expressed protein
LOC_Os05g12300Os.26561.1.S2_at11/115+7041323..7045443expressed protein
LOC_Os05g12300Os.27790.2.A1_x_at4/115+7041323..7045443expressed protein
LOC_Os05g12300OsAffx.4936.1.S1_at1/115+7041323..7045443expressed protein
LOC_Os05g12310NANA5+7055799..7057673retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12320OsAffx.14656.1.S1_at11/115+7062200..7064348MtN3/saliva family protein, expressed
LOC_Os05g12330OsAffx.14657.1.S1_at11/115+7066396..7067821esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os05g12340Os.1709.1.S1_x_at11/115+7069879..7073434retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12350NANA5+7074041..7078721hypothetical protein
LOC_Os05g12360NANA5+7085977..7090113retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14656.1.S1_at--638--5371Chr05:7062517..7062541 (25 bp)
GAAGAATTCTCGTGCATACCATATA
LOC_Os05g12320
OsAffx.14656.1.S1_at--1085--431Chr05:7062541..7062565 (25 bp)
ATCTTAGCTTTGTTCAGCTGCCTCA
LOC_Os05g12320
OsAffx.14656.1.S1_at--623--3391Chr05:7062555..7062579 (25 bp)
CAGCTGCCTCACATACAGTTGGTAT
LOC_Os05g12320
OsAffx.14656.1.S1_at--1145--8271Chr05:7063549..7063573 (25 bp)
GGCATCTCTGATTCTAGCAGTCTTT
LOC_Os05g12320
OsAffx.14656.1.S1_at--228--7411Chr05:7063641..7063665 (25 bp)
GTGTTGGTCTAGTGTCTTCCATATC
LOC_Os05g12320
OsAffx.14656.1.S1_at--876--10671Chr05:7063657..7063681 (25 bp)
TTCCATATCAATGTACGGCTCTCCG
LOC_Os05g12320
OsAffx.14656.1.S1_at--1139--8311Chr05:7063673..7063693 (21 bp)
GGCTCTCCGCTGGTAGCTATGAAAC
LOC_Os05g12320
OsAffx.14656.1.S1_at--823--1111Chr05:7064016..7064040 (25 bp)
AGTGTTGAGTTCATGCCTTTCTATC
LOC_Os05g12320
OsAffx.14656.1.S1_at--1070--10131Chr05:7064037..7064061 (25 bp)
TATCTGTCATTGTTTACCCTCTTCA
LOC_Os05g12320
OsAffx.14656.1.S1_at--50--9871Chr05:7064051..7064075 (25 bp)
TACCCTCTTCACAAGTTTAACCTGG
LOC_Os05g12320
OsAffx.14656.1.S1_at--827--5071Chr05:7064262..7064286 (25 bp)
GCACCTAAGGTGCTTCACGATATTG
LOC_Os05g12320
Target Sequence 
GAAGAATTCTCGTGCATACCATATATCTTAGCTTTGTTCAGCTGCCTCACATACAGTTGGTATGGTTTTCCTGTGAAGCA
AGTCATGCTGATGGCATCTCTGATTCTAGCAGTCTTTTGCATGACTGTGTTTTTCTCAAGCTTTTCAATACACAACCATC
ATATACGTAAGGTATTTGTTGGTAGTGTTGGTCTAGTGTCTTCCATATCAATGTACGGCTCTCCGCTGGTAGCTATGAAA
CAAGTTATCAGGACAAAGAGTGTTGAGTTCATGCCTTTCTATCTGTCATTGTTTACCCTCTTCACAAGTTTAACCTGGAT
GGCATATGGAGTCATAGGAAGGGATCCTTTTATCGCGACCCCAAACTGCATCGGCAGCATAATGGGTATACTTCAGTTGG
TTGTATACTGCATTTACAGCAAATGCAAGGAAGCACCTAAGGTGCTTCACGATATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14656.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis