Browse Element(s) Details


Os.26561.1.S1_at

Description gb:AK107105.1
DB_XREF= gi:32992314
TID=Os.26561.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26561 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-122-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-122-A10, full insert sequence.
FL= gb:AK100400.1 gb:AK107105.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1230011/11expressed protein
LOC_Os06g255002/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12270OsAffx.26853.1.S1_at11/115+7019000..7019674hypothetical protein
LOC_Os05g12280OsAffx.4313.1.S1_at11/115+7029284..7030166expressed protein
LOC_Os05g12290OsAffx.10048.1.S1_x_at1/115+7035179..7039333retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g12300Os.26561.1.S1_at11/115+7041323..7045443expressed protein
LOC_Os05g12300Os.26561.1.S2_x_at11/115+7041323..7045443expressed protein
LOC_Os05g12300Os.26561.1.S2_at11/115+7041323..7045443expressed protein
LOC_Os05g12300Os.27790.2.A1_x_at4/115+7041323..7045443expressed protein
LOC_Os05g12300OsAffx.4936.1.S1_at1/115+7041323..7045443expressed protein
LOC_Os05g12310NANA5+7055799..7057673retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12320OsAffx.14656.1.S1_at11/115+7062200..7064348MtN3/saliva family protein, expressed
LOC_Os05g12330OsAffx.14657.1.S1_at11/115+7066396..7067821esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os05g12340Os.1709.1.S1_x_at11/115+7069879..7073434retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26561.1.S1_at--539--8351Chr05:7041617..7041641 (25 bp)
GGCGGCGCCAGAGGTGGGTCAAACG
LOC_Os05g12300
Os.26561.1.S1_at--758--5771Chr05:7041687..7041711 (25 bp)
GACGACAATGCGTGGCGGGCCTTCC
LOC_Os05g12300
Os.26561.1.S1_at--12--9871Chr05:7042044..7042068 (25 bp)
TACAGTGCAGTAGAGGTCCCATCGA
LOC_Os05g12300
Os.26561.1.S1_at--994--6611Chr05:7042053..7042077 (25 bp)
GTAGAGGTCCCATCGATCGGTAACA
LOC_Os05g12300
Os.26561.1.S1_at--984--7791Chr05:7042058..7042082 (25 bp)
GGTCCCATCGATCGGTAACATCGAT
LOC_Os05g12300
Os.26561.1.S1_at--92--2511Chr05:7042074..7042098 (25 bp)
AACATCGATTCACTGATTCTTCCAC
LOC_Os05g12300
Os.26561.1.S1_at--149--6571Chr05:7042080..7042104 (25 bp)
GATTCACTGATTCTTCCACATCTCT
LOC_Os05g12300
Os.26561.1.S1_at--1119--4891Chr05:7042115..7042139 (25 bp)
GCTTCGTCGCCCACATTCACTGATT
LOC_Os05g12300
Os.26561.1.S1_at--283--3591Chr05:7042128..7042152 (25 bp)
CATTCACTGATTCTTGGAAGCACAA
LOC_Os05g12300
Os.26561.1.S1_at--853--7952Chr05:7042159..7042183 (25 bp)
GGATCACATATGTACGTTACTACCT
LOC_Os05g12300
Os.26561.1.S1_at--244--3312Chr05:7042163..7042187 (25 bp)
CACATATGTACGTTACTACCTTTTC
LOC_Os05g12300
Target Sequence 
GGCGGCGCCAGAGGTGGGTCAAACGGAGGCGACGGCGCTGGGCGCCGCGGAGGCCCGAGTGGAGGGCGGCGACGACAATG
CGTGGCGGGCCTTCCTCCGCGCTGCCCCCCCTCGCTGGCTGCCGGCTCCCGAAGCTCCGCCTTCACCGCTCTGTTCCTCC
CCAGCTCCGCCGCTCTCCCTCCCCATCTGCAGCTCGACGGCACCGGCGGCGGCTTGACGACGGCCGCTCCGTGCCCCTCC
TCGCCAGATCCGGCCTTAAGGTCGCCGGATCTGGCCTTGGGAGGCGGTGGCGGCGGTGGCGGCTTGAAGGCGGCAGCAGC
AGATCGAAGGCTGCGGCAGCGGCTCGACTGCGGGAGCAGCAGCTCGAAGGCGGCGGCGGCGGCTCGACTGCAGGAACGGC
TCGACGACAGCCAGCCCGCGCCCCCTCTACAGTGCAGTAGAGGTCCCATCGATCGGTAACATCGATTCACTGATTCTTCC
ACATCTCTCCCTTGCGCCGCTTCGTCGCCCACATTCACTGATTCTTGGAAGCACAAACGAAAGGATCACATATGTACGTT
ACTACCTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26561.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis