Browse Element(s) Details


Os.53989.1.S1_at

Description gb:AK111195.1
DB_XREF= gi:32996404
TID=Os.53989.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53989 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-178-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-178-C02, full insert sequence.
FL= gb:AK101161.1 gb:AK111195.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0775011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07700OsAffx.12769.1.S1_at11/113+3890769..3891122hypothetical protein
LOC_Os03g07710OsAffx.3167.1.S1_at11/113+3895162..3895670hypothetical protein
LOC_Os03g07720OsAffx.3168.1.S1_at9/113+3897711..3903651hypothetical protein
LOC_Os03g07730OsAffx.12770.1.S1_at11/113+3904351..3905698hypothetical protein
LOC_Os03g07740NANA3+3914200..3914762hypothetical protein
LOC_Os03g07750Os.53989.1.S1_at11/113+3915792..3919929expressed protein
LOC_Os03g07760OsAffx.16463.2.S1_at11/113+3921220..3922075hypothetical protein
LOC_Os03g07770NANA3+3923909..3930063transposon protein, putative, unclassified
LOC_Os03g07780NANA3+3930706..3933929transposon protein, putative, unclassified
LOC_Os03g07790Os.18122.1.S1_at11/113+3940152..3945416Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g07790Os.16379.1.S1_at1/113+3940152..3945416Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53989.1.S1_at--433--8831Chr03:3916948..3916972 (25 bp)
TGATTTCATTTTGTCTGCACCCAAC
LOC_Os03g07750
Os.53989.1.S1_at--284--2531Chr03:3916926..3916950 (25 bp)
AACTTTGTTCGCTGGCATAGGCCGC
LOC_Os03g07750
Os.53989.1.S1_at--388--1531Chr03:3916814..3916838 (25 bp)
AGCAGTTTTCTGCATGTGGTACCAT
LOC_Os03g07750
Os.53989.1.S1_at--475--9051Chr03:3916682..3916706 (25 bp)
TGCAGTGGCCTGTTTTTATTTCTCC
LOC_Os03g07750
Os.53989.1.S1_at--702--251Chr03:3916588..3916610 (23 bp)
ATATCCCGTTCAGAGCTCATCAGTG
LOC_Os03g07750
Os.53989.1.S1_at--711--7291Chr03:3915975..3915999 (25 bp)
GTGCCCGTGATGATCCTATTCTTAA
LOC_Os03g07750
Os.53989.1.S1_at--670--291Chr03:3915937..3915961 (25 bp)
ATAGACGGGCATCTTCTCATTGCAG
LOC_Os03g07750
Os.53989.1.S1_at--588--5511Chr03:3915910..3915934 (25 bp)
GAAAATCTTCTCGTGGACCTTAGTT
LOC_Os03g07750
Os.53989.1.S1_at--905--3011Chr03:3915872..3915896 (25 bp)
AATCCAGAATTCAGTCCGTCTTGTG
LOC_Os03g07750
Os.53989.1.S1_at--169--5431Chr03:3915831..3915855 (25 bp)
GAACCTTTCTACGTGGACCATTGCT
LOC_Os03g07750
Os.53989.1.S1_at--94--7431Chr03:3915803..3915827 (25 bp)
GTGTTCTTGCTTATCATGAGTTCTG
LOC_Os03g07750
Target Sequence 
TGATTTCATTTTGTCTGCACCCAACTTTGTTCGCTGGCATAGGCCGCCATTCTCTGCTGGTGGAACTCTGCCTCCACCTC
CCCCAACGCAGCAGCCCTCAGCTTTTGGTACTCTGCCTCCGCCACGCCCATCGCAGCAGTTTTCTGCATGTGGTACCATG
CTTCCGCCATCCTCATCGCAGCCATTCTGTCCTTCGGTTCGATCGCTCGCAATGCAGACGTTCGCTACTCCTGGTCCAAT
TCTGCCTGGACCTCCTGTTACTCCAATGCAGTGGCCTGTTTTTATTTCTCCTCCACAGCAGCAGCTTTCTGCCTGTGCTG
TATGGCCGCAGGCAGGTACCCTGCAGCAGGAACTGCCACCCCATATCCCGTTCAGAGCTCATCAGTGCCCGTGATGATCC
TATTCTTAATGAAGCTGGTTGAATAGACGGGCATCTTCTCATTGCAGGAGAAAATCTTCTCGTGGACCTTAGTTACTTTA
TTTGTTAAATCCAGAATTCAGTCCGTCTTGTGATAACTATTGATATACGAACCTTTCTACGTGGACCATTGCTGATGTGT
TCTTGCTTATCATGAGTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53989.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis