Browse Element(s) Details


OsAffx.12770.1.S1_at

Description tigr:9631.m00708
TID=OsAffx.12770.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0773011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07680Os.45976.1.S1_x_at3/113+3879573..3883226transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g07690NANA3+3889584..3890018hypothetical protein
LOC_Os03g07700OsAffx.12769.1.S1_at11/113+3890769..3891122hypothetical protein
LOC_Os03g07710OsAffx.3167.1.S1_at11/113+3895162..3895670hypothetical protein
LOC_Os03g07720OsAffx.3168.1.S1_at9/113+3897711..3903651hypothetical protein
LOC_Os03g07730OsAffx.12770.1.S1_at11/113+3904351..3905698hypothetical protein
LOC_Os03g07740NANA3+3914200..3914762hypothetical protein
LOC_Os03g07750Os.53989.1.S1_at11/113+3915792..3919929expressed protein
LOC_Os03g07760OsAffx.16463.2.S1_at11/113+3921220..3922075hypothetical protein
LOC_Os03g07770NANA3+3923909..3930063transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12770.1.S1_at--308--7811Chr03:3904830..3904999 (25 bp)
GGTCTGCGTGCTGAATCAGCTACCA
LOC_Os03g07730
OsAffx.12770.1.S1_at--10--9671Chr03:3904815..3904839 (25 bp)
TCAGCTACCACTACACACGATCAAA
LOC_Os03g07730
OsAffx.12770.1.S1_at--312--2191Chr03:3904803..3904827 (25 bp)
ACACACGATCAAACGCTATTAGTAA
LOC_Os03g07730
OsAffx.12770.1.S1_at--1022--4851Chr03:3904789..3904813 (25 bp)
GCTATTAGTAACCACGACACCGTCG
LOC_Os03g07730
OsAffx.12770.1.S1_at--311--9631Chr03:3904724..3904748 (25 bp)
TCATGGTGGCGAGTGCTCCGGCCAA
LOC_Os03g07730
OsAffx.12770.1.S1_at--353--1771Chr03:3904692..3904716 (25 bp)
ACCGGGAATAGTAATGCCAGATCGC
LOC_Os03g07730
OsAffx.12770.1.S1_at--250--471Chr03:3904463..3904487 (25 bp)
ATCTCGACGGAGCATGCGACCACGA
LOC_Os03g07730
OsAffx.12770.1.S1_at--309--611Chr03:3904450..3904474 (25 bp)
ATGCGACCACGATGCTGAGAACGTC
LOC_Os03g07730
OsAffx.12770.1.S1_at--62--4371Chr03:3904444..3904468 (25 bp)
CCACGATGCTGAGAACGTCGTTGCC
LOC_Os03g07730
OsAffx.12770.1.S1_at--223--10651Chr03:3904424..3904448 (25 bp)
TTGCCGAAGAAAAGGACGCGGTCGT
LOC_Os03g07730
OsAffx.12770.1.S1_at--922--7532Chr06:25748272..25748296 (25 bp)
GTGGCGTACCACCACACCTTGTAGG
NONE
Target Sequence 
GGTCTGCGTGCTGAATCAGCTACCACTACACACGATCAAACGCTATTAGTAACCACGACACCGTCGCCGCCGGCGTCCAC
GGTTTCGATGCCTCCCACCAGCTCGGTCATGGTGGCGAGTGCTCCGGCCAATTCGACGACCGGGAATAGTAATGCCAGAT
CGCCGCACCCGCCCGTGCACGTGGCGGTGACGGTGGCCGCGACGGCGAGGACCTTCGTGGCCGTCTCCTTCGTCGGCTTC
GCGCTGTGGGAGCTGGCACGCCACGCCAGGGCGAGGAGGCGCGGCACCACGGCGATGGCGGTGGCCGACAAGCGCGACAG
CCTCGCGTCGGCGGCGGCGTTCGGCGCTGCGGTACATCCATGCCGCCATCTCGACGGAGCATGCGACCACGATGCTGAGA
ACGTCGTTGCCGAAGAAAAGGACGCGGTCGTCGGAGGTGGCGTACCACCACACCTTGTAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12770.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis