Browse Element(s) Details


Os.54016.1.S1_at

Description gb:AK101297.1
DB_XREF= gi:32986506
TID=Os.54016.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54016 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033033I19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033I19, full insert sequence.
FL= gb:AK101297.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4975011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49680OsAffx.25645.1.S1_at11/113+28241608..28243106hypothetical protein
LOC_Os03g49690OsAffx.13425.1.S1_at11/113+28243700..28244656hypothetical protein
LOC_Os03g49700Os.47931.1.A1_at11/113+28246320..28249464Gtk16 protein, putative, expressed
LOC_Os03g49710Os.14353.1.S1_s_at11/113+28250462..2825236230S ribosomal protein S13, putative, expressed
LOC_Os03g49710OsAffx.25646.1.S1_at10/113+28250462..2825236230S ribosomal protein S13, putative, expressed
LOC_Os03g49720Os.11854.1.S1_at10/113+28254159..28257104plastid-lipid associated protein PAP, putative, expressed
LOC_Os03g49730Os.9642.1.S1_at11/113+28257536..28261285MYND finger family protein, expressed
LOC_Os03g49740OsAffx.25647.2.S1_at11/113+28262020..28262777hypothetical protein
LOC_Os03g49740OsAffx.25647.1.S1_x_at4/113+28262020..28262777hypothetical protein
LOC_Os03g49740OsAffx.25647.1.S1_at3/113+28262020..28262777hypothetical protein
LOC_Os03g49750Os.54016.1.S1_at11/113+28263470..28269081protein kinase family protein, putative, expressed
LOC_Os03g49770Os.6670.1.S1_at11/113+28279127..28288339Oxysterol-binding protein, expressed
LOC_Os03g49770Os.57422.1.S1_x_at10/113+28279127..28288339Oxysterol-binding protein, expressed
LOC_Os03g49780OsAffx.25649.1.S1_at11/113+28292772..28293512hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000165biological_processMAPKKK cascade
GO:0005737cellular_componentcytoplasm
GO:0004708molecular_functionMAP kinase kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54016.1.S1_at--142--5811Chr03:28268522..28268546 (25 bp)
GACCAAGACCCGTGTAGGTTGCTGA
LOC_Os03g49750
Os.54016.1.S1_at--109--7671Chr03:28268553..28268577 (25 bp)
GGGTTAGAGTTCACTGGGCCAATCC
LOC_Os03g49750
Os.54016.1.S1_at--100--5911Chr03:28268600..28268624 (25 bp)
GAGCTCGAGAAGGATCAATGCCGTC
LOC_Os03g49750
Os.54016.1.S1_at--897--4491Chr03:28268619..28268643 (25 bp)
GCCGTCCAGCCACTCAAATGTAAGA
LOC_Os03g49750
Os.54016.1.S1_at--94--6511Chr03:28268667..28268691 (25 bp)
GATATGCGATGCGTATGTCCAGTTA
LOC_Os03g49750
Os.54016.1.S1_at--83--951Chr03:28268803..28268827 (25 bp)
AGGAAGCTTGCTACTGTGTGCCGTC
LOC_Os03g49750
Os.54016.1.S1_at--492--7731Chr03:28268832..28268856 (25 bp)
GGTGGGACATCTTTTTATCACGCAA
LOC_Os03g49750
Os.54016.1.S1_at--412--3351Chr03:28268850..28268874 (25 bp)
CACGCAAGATTTTCCTCAGATGATG
LOC_Os03g49750
Os.54016.1.S1_at--67--6291Chr03:28268871..28268895 (25 bp)
GATGTATTCCTGTTACTGCTTGAAC
LOC_Os03g49750
Os.54016.1.S1_at--616--10431Chr03:28268932..28268956 (25 bp)
TTAGTATCTGTATCGCTTGGTTCCT
LOC_Os03g49750
Os.54016.1.S1_at--392--8291Chr03:28269032..28269056 (25 bp)
GGCATTGTACGCTCCATATTTGCGT
LOC_Os03g49750
Target Sequence 
GACCAAGACCCGTGTAGGTTGCTGATGGAGAGGGTTAGAGTTCACTGGGCCAATCCCAAGCTTCATAGTTTTATTGCAGA
GCTCGAGAAGGATCAATGCCGTCCAGCCACTCAAATGTAAGAGAGCTTTACATTGATAGAATGTGGATATGCGATGCGTA
TGTCCAGTTATGCTAGAAGCATCTTACTGATACACAACAAGGGGACAAGCTGACTATAGCTAACGTTATAGCTTATCTGA
TTATTGAAATTGCCTACTATATTCATATATATTTGGTTATTAGGAAGCTTGCTACTGTGTGCCGTCAGAAGGTGGGACAT
CTTTTTATCACGCAAGATTTTCCTCAGATGATGTATTCCTGTTACTGCTTGAACTAGGAGGTAGGCAGAACCTTAAGTAG
CACAAGTGATTTAGTATCTGTATCGCTTGGTTCCTTTGAATTTATTGTTGTAATCTGTAAATAGTACTTGCATGAGTAGG
AAACTGGGAGCATTTTTTTGTGGTGCCCTTGGCATTGTACGCTCCATATTTGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54016.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis