Browse Element(s) Details


OsAffx.25646.1.S1_at

Description tigr:9631.m04850
TID=OsAffx.25646.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative 30S ribosomal protein S13
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4971010/1130S ribosomal protein S13, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49650NANA3+28228066..28228527retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g49660NANA3+28229639..28234007retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g49680OsAffx.25645.1.S1_at11/113+28241608..28243106hypothetical protein
LOC_Os03g49690OsAffx.13425.1.S1_at11/113+28243700..28244656hypothetical protein
LOC_Os03g49700Os.47931.1.A1_at11/113+28246320..28249464Gtk16 protein, putative, expressed
LOC_Os03g49710Os.14353.1.S1_s_at11/113+28250462..2825236230S ribosomal protein S13, putative, expressed
LOC_Os03g49710OsAffx.25646.1.S1_at10/113+28250462..2825236230S ribosomal protein S13, putative, expressed
LOC_Os03g49720Os.11854.1.S1_at10/113+28254159..28257104plastid-lipid associated protein PAP, putative, expressed
LOC_Os03g49730Os.9642.1.S1_at11/113+28257536..28261285MYND finger family protein, expressed
LOC_Os03g49740OsAffx.25647.2.S1_at11/113+28262020..28262777hypothetical protein
LOC_Os03g49740OsAffx.25647.1.S1_x_at4/113+28262020..28262777hypothetical protein
LOC_Os03g49740OsAffx.25647.1.S1_at3/113+28262020..28262777hypothetical protein
LOC_Os03g49750Os.54016.1.S1_at11/113+28263470..28269081protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0005763cellular_componentmitochondrial small ribosomal subunit
GO:0015935cellular_componentsmall ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25646.1.S1_at--814--171Chr03:28252193..28252217 (25 bp)
ATTTTTTGTGTTCTGCTTGACCACG
LOC_Os03g49710
OsAffx.25646.1.S1_at--684--10371Chr03:28252194..28252218 (25 bp)
TTTTTTGTGTTCTGCTTGACCACGC
LOC_Os03g49710
OsAffx.25646.1.S1_at--642--10351Chr03:28252195..28252219 (25 bp)
TTTTTGTGTTCTGCTTGACCACGCT
LOC_Os03g49710
OsAffx.25646.1.S1_at--20--10411Chr03:28252196..28252220 (25 bp)
TTTTGTGTTCTGCTTGACCACGCTC
LOC_Os03g49710
OsAffx.25646.1.S1_at--545--10251Chr03:28252197..28252221 (25 bp)
TTTGTGTTCTGCTTGACCACGCTCT
LOC_Os03g49710
OsAffx.25646.1.S1_at--875--10831Chr03:28252198..28252222 (25 bp)
TTGTGTTCTGCTTGACCACGCTCTT
LOC_Os03g49710
OsAffx.25646.1.S1_at--963--8671Chr03:28252199..28252223 (25 bp)
TGTGTTCTGCTTGACCACGCTCTTG
LOC_Os03g49710
OsAffx.25646.1.S1_at--148--7431Chr03:28252200..28252224 (25 bp)
GTGTTCTGCTTGACCACGCTCTTGT
LOC_Os03g49710
OsAffx.25646.1.S1_at--968--8791Chr03:28252201..28252225 (25 bp)
TGTTCTGCTTGACCACGCTCTTGTC
LOC_Os03g49710
OsAffx.25646.1.S1_at--136--6731Chr03:28252202..28252226 (25 bp)
GTTCTGCTTGACCACGCTCTTGTCT
LOC_Os03g49710
Target Sequence 
ATTTTTTGTGTTCTGCTTGACCACGCTCTTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis