Browse Element(s) Details


Os.47931.1.A1_at

Description gb:AK073877.1
DB_XREF= gi:32983900
TID=Os.47931.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47931 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033073B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033073B06, full insert sequence.
FL= gb:AK073877.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4970011/11Gtk16 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49640Os.14595.1.S1_at11/113+28218775..28224883Mitogen-activated protein kinase 1, putative, expressed
LOC_Os03g49650NANA3+28228066..28228527retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g49660NANA3+28229639..28234007retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g49680OsAffx.25645.1.S1_at11/113+28241608..28243106hypothetical protein
LOC_Os03g49690OsAffx.13425.1.S1_at11/113+28243700..28244656hypothetical protein
LOC_Os03g49700Os.47931.1.A1_at11/113+28246320..28249464Gtk16 protein, putative, expressed
LOC_Os03g49710Os.14353.1.S1_s_at11/113+28250462..2825236230S ribosomal protein S13, putative, expressed
LOC_Os03g49710OsAffx.25646.1.S1_at10/113+28250462..2825236230S ribosomal protein S13, putative, expressed
LOC_Os03g49720Os.11854.1.S1_at10/113+28254159..28257104plastid-lipid associated protein PAP, putative, expressed
LOC_Os03g49730Os.9642.1.S1_at11/113+28257536..28261285MYND finger family protein, expressed
LOC_Os03g49740OsAffx.25647.2.S1_at11/113+28262020..28262777hypothetical protein
LOC_Os03g49740OsAffx.25647.1.S1_x_at4/113+28262020..28262777hypothetical protein
LOC_Os03g49740OsAffx.25647.1.S1_at3/113+28262020..28262777hypothetical protein
LOC_Os03g49750Os.54016.1.S1_at11/113+28263470..28269081protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47931.1.A1_at--800--10751Chr03:28248513..28248537 (25 bp)
TTGACATACCTTTCCACATTTTCTT
LOC_Os03g49700
Os.47931.1.A1_at--174--2031Chr03:28249070..28249094 (25 bp)
ACTAGTAATTCTATTCCTCATTGGA
LOC_Os03g49700
Os.47931.1.A1_at--164--5471Chr03:28249093..28249117 (25 bp)
GAACTGTTGCTGTTGCTCCAACGAT
LOC_Os03g49700
Os.47931.1.A1_at--1--5811Chr03:28249297..28249321 (25 bp)
GACGCTAAGCTGTTGCATCTGTTGC
LOC_Os03g49700
Os.47931.1.A1_at--60--491Chr03:28249313..28249337 (25 bp)
ATCTGTTGCCCCAATGTTCTTATAA
LOC_Os03g49700
Os.47931.1.A1_at--17--3211Chr03:28249324..28249348 (25 bp)
CAATGTTCTTATAAATCCCCACGTC
LOC_Os03g49700
Os.47931.1.A1_at--6--4351Chr03:28249342..28249366 (25 bp)
CCACGTCCCAATTAACGATGCGGTG
LOC_Os03g49700
Os.47931.1.A1_at--878--4051Chr03:28249357..28249381 (25 bp)
CGATGCGGTGGAACTATCTGGTTGT
LOC_Os03g49700
Os.47931.1.A1_at--19--7051Chr03:28249394..28249418 (25 bp)
GTAAATCTTACTGCTCCCAATTGGA
LOC_Os03g49700
Os.47931.1.A1_at--1136--11Chr03:28249413..28249437 (25 bp)
ATTGGATGGGCAACCTTATCCGTCG
LOC_Os03g49700
Os.47931.1.A1_at--211--5151Chr03:28249422..28249446 (25 bp)
GCAACCTTATCCGTCGTTTTGAAAT
LOC_Os03g49700
Target Sequence 
TTGACATACCTTTCCACATTTTCTTTNGCNGCAACACTAATTGGTCTNATNCCCAGCATCTTANATCACTGTAAAGGCTG
GTAGGGCANNAGGCGATCTAAGATCANTTAGGGAACTGTATGACTCNAAAACACTAGTAATTCTATTCCTCATTGGAACT
GTTGCTGTTGCTCCAACGATTCTGAAAAGGAAGAGAATATACGAATGANGCCACTAAAAAGCATCTAAACAGTGTATTAG
TAGAGCACTCCAGAAGTGTATTAGTTTTTTTTCCCTTTCTTTGTTGATATTGTATACCTATTCAATTTAGCTGTAGAGAT
GTAGTAGTNACATGATGAATGTTTTCCTCAATAATAGATGACGCTAAGCTGTTGCATCTGTTGCCCCAATGTTCTTATAA
ATCCCCACGTCCCAATTAACGATGCGGTGGAACTATCTGGTTGTTGTGGTTTTACAGTAAATCTTACTGCTCCCAATTGG
ATGGGCAACCTTATCCGTCGTTTTGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47931.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis