Browse Element(s) Details


Os.14595.1.S1_at

Description gb:AK100023.1
DB_XREF= gi:32985232
TID=Os.14595.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14595 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013145O20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013145O20, full insert sequence.
FL= gb:AK100023.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4964011/11Mitogen-activated protein kinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49600Os.5072.1.S1_at11/113+28189476..28194516Glycosyl hydrolase family 1 protein, expressed
LOC_Os03g49610Os.32141.1.S1_at11/113+28197907..28203199Glycosyl hydrolase family 1 protein, expressed
LOC_Os03g49620Os.18919.1.A1_at11/113+28203607..28209054BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os03g49630Os.27346.1.S1_at11/113+28209757..28215653expressed protein
LOC_Os03g49640Os.14595.1.S1_at11/113+28218775..28224883Mitogen-activated protein kinase 1, putative, expressed
LOC_Os03g49650NANA3+28228066..28228527retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g49660NANA3+28229639..28234007retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g49680OsAffx.25645.1.S1_at11/113+28241608..28243106hypothetical protein
LOC_Os03g49690OsAffx.13425.1.S1_at11/113+28243700..28244656hypothetical protein
LOC_Os03g49700Os.47931.1.A1_at11/113+28246320..28249464Gtk16 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000165biological_processMAPKKK cascade
GO:0006970biological_processresponse to osmotic stress
GO:0046686biological_processresponse to cadmium ion
GO:0004709molecular_functionMAP kinase kinase kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14595.1.S1_at--13--931Chr03:28219358..28219382 (25 bp)
AGGAGAACGACCTCAAATTCCCAGC
LOC_Os03g49640
Os.14595.1.S1_at--795--1231Chr03:28219289..28219313 (25 bp)
AGTTGATCCAGAGCAACGGCCTTCT
LOC_Os03g49640
Os.14595.1.S1_at--961--371Chr03:28219262..28219286 (25 bp)
ATCACAACTTATGTCACACCCATTT
LOC_Os03g49640
Os.14595.1.S1_at--1097--2131Chr03:28219247..28219271 (25 bp)
ACACCCATTTGTTAATAGACCGCTT
LOC_Os03g49640
Os.14595.1.S1_at--583--10031Chr03:28219232..28219256 (25 bp)
TAGACCGCTTCGAGCTTCTTTTGAA
LOC_Os03g49640
Os.14595.1.S1_at--301--9271Chr03:28219196..28219220 (25 bp)
TCCTGCCATCAGCTCGTATTGATTG
LOC_Os03g49640
Os.14595.1.S1_at--295--6611Chr03:28219176..28219200 (25 bp)
GATTGTGGCATGCTTCTGTTTTTGA
LOC_Os03g49640
Os.14595.1.S1_at--58--5511Chr03:28219036..28219157 (25 bp)
GAACAAATCTTCGTGGTTCCCACTC
LOC_Os03g49640
Os.14595.1.S1_at--230--7911Chr03:28219022..28219046 (25 bp)
GGTTCCCACTCAGTGCCAGAAAGGA
LOC_Os03g49640
Os.14595.1.S1_at--1031--4711Chr03:28218926..28218950 (25 bp)
GCTGCGTCGGTCTGGGAATATTTGA
LOC_Os03g49640
Os.14595.1.S1_at--190--8591Chr03:28218784..28218808 (25 bp)
TGGTTTGTTGCTCCTGAAGCACTCA
LOC_Os03g49640
Target Sequence 
AGGAGAACGACCTCAAATTCCCAGCTATTTGTCAAAAGATGCTCAAGATTTCATTAGCCNAGTGTGTACAAGTTGATCCA
GAGCAACGGCCTTCTGCATCACAACTTATGTCACACCCATTTGTTAATAGACCGCTTCGAGCTTCTTTTGAATCTGCATC
CCCTCCTGCCATCAGCTCGTATTGATTGTGGCATGCTTCTGTTTTTGAGAACATTGCTGAGCTCATGAACAAATCTTCGT
GGTTCCCACTCAGTGCCAGAAAGGAACTTCTTGGGCTTGTTTAGGATATAGTTTAGCATTTTAGTCAGTTAGGACTAGTG
AGATAAGCATTACCTTGCTGCGTCGGTCTGGGAATATTTGAGTGTTTTCTTGTTGAAGACATTCAGTAGATNNNNNNNGA
CNTGGNANGNGGGAGNTGGAATTGCTTGCAATGTATTTGAGCTTAAGCCATTGTAAATTTTTGACTTCATCATTATTTTG
GTTTGTTGCTCCTGAAGCACTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14595.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis