Browse Element(s) Details


Os.27346.1.S1_at

Description gb:AK073831.1
DB_XREF= gi:32983854
TID=Os.27346.1
CNT=24
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.27346 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033067N14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033067N14, full insert sequence.
FL= gb:AK062209.1 gb:AK073831.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4963011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49580Os.16924.1.S1_at11/113+28185367..28188518Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os03g49590OsAffx.13424.1.S1_at11/113+28188570..28189223hypothetical protein
LOC_Os03g49600Os.5072.1.S1_at11/113+28189476..28194516Glycosyl hydrolase family 1 protein, expressed
LOC_Os03g49610Os.32141.1.S1_at11/113+28197907..28203199Glycosyl hydrolase family 1 protein, expressed
LOC_Os03g49620Os.18919.1.A1_at11/113+28203607..28209054BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os03g49630Os.27346.1.S1_at11/113+28209757..28215653expressed protein
LOC_Os03g49640Os.14595.1.S1_at11/113+28218775..28224883Mitogen-activated protein kinase 1, putative, expressed
LOC_Os03g49650NANA3+28228066..28228527retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g49660NANA3+28229639..28234007retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27346.1.S1_at--1044--6191Chr03:28210333..28210357 (25 bp)
GAGGAATTACACTTGTCGGCGCAGT
LOC_Os03g49630
Os.27346.1.S1_at--800--5951Chr03:28210185..28210209 (25 bp)
GAGCAAGGACAGAAGCTTCGCAGGT
LOC_Os03g49630
Os.27346.1.S1_at--898--10631Chr03:28210169..28210193 (25 bp)
TTCGCAGGTGTTATAGCTCCATTCT
LOC_Os03g49630
Os.27346.1.S1_at--395--9651Chr03:28210136..28210160 (25 bp)
TCAGTTCAGGGCGACTCAAGGGCAA
LOC_Os03g49630
Os.27346.1.S1_at--245--2191Chr03:28210097..28210121 (25 bp)
ACAAAGGCGGGTGCCGTGTATCCCG
LOC_Os03g49630
Os.27346.1.S1_at--808--5371Chr03:28210048..28210072 (25 bp)
GAAGAACGGACATGCCACGGTGCCA
LOC_Os03g49630
Os.27346.1.S1_at--809--7771Chr03:28210030..28210054 (25 bp)
GGTGCCACCTAAGCGCAATTTGGAA
LOC_Os03g49630
Os.27346.1.S1_at--294--9751Chr03:28209940..28209964 (25 bp)
TAATCAGCTACTCCAGTTTGCACGA
LOC_Os03g49630
Os.27346.1.S1_at--977--3431Chr03:28209927..28209951 (25 bp)
CAGTTTGCACGAGTAGAGGGCTTTA
LOC_Os03g49630
Os.27346.1.S1_at--379--1451Chr03:28209902..28209926 (25 bp)
AGAAGCGACTCCACTAGTATAGCAA
LOC_Os03g49630
Os.27346.1.S1_at--110--4291Chr03:28209809..28209833 (25 bp)
CCTCAAGTTCTCTCCATGTACAGAA
LOC_Os03g49630
Target Sequence 
GAGGAATTACACTTGTCGGCGCAGTGTTNTTCATAGCTCATCTCAGAAGGAGCAAGGACAGAAGCTTCGCAGGTGTTATA
GCTCCATTCTNTGAAAAATCAGTTCAGGGCGACTCAAGGGCAAAGAAAGTAGAGAAAACAAAGGCGGGTGCCGTGTATCC
CGGGGAATGGCTAAAAGTTTAATCAAGAAGAACGGACATGCCACGGTGCCACCTAAGCGCAATTTGGAAGTTTATTTTGC
AATATGCATACATCTTGTAAAAGTAAAATCCATATGCTAAAGAACACTTTTTTTTAATCAGCTACTCCAGTTTGCACGAG
TAGAGGGCTTTAAGAAGCGACTCCACTAGTATAGCAAGTGTTAATATTTATTTTCTTATAGCAGTCCAAAGCTTACAATA
ATCTGTAATCTGGATANACAAGATGCCTCAAGTTCTCTCCATGTACAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27346.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis