Browse Element(s) Details


OsAffx.13424.1.S1_at

Description tigr:9631.m04838
TID=OsAffx.13424.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4959011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49540NANA3+28162617..28165110transposon protein, putative, Mutator sub-class
LOC_Os03g49550Os.51915.2.S1_at11/113+28168877..28170460UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os03g49560NANA3+28173871..28174470hypothetical protein
LOC_Os03g49570Os.10801.1.S1_a_at11/113+28178462..28183265phosphate translocator, putative, expressed
LOC_Os03g49580Os.16924.1.S1_at11/113+28185367..28188518Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os03g49590OsAffx.13424.1.S1_at11/113+28188570..28189223hypothetical protein
LOC_Os03g49600Os.5072.1.S1_at11/113+28189476..28194516Glycosyl hydrolase family 1 protein, expressed
LOC_Os03g49610Os.32141.1.S1_at11/113+28197907..28203199Glycosyl hydrolase family 1 protein, expressed
LOC_Os03g49620Os.18919.1.A1_at11/113+28203607..28209054BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os03g49630Os.27346.1.S1_at11/113+28209757..28215653expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13424.1.S1_at--1008--9651Chr03:28189138..28189162 (25 bp)
TCAGCTTCTTCTACCGGTTCAGGTG
LOC_Os03g49590
OsAffx.13424.1.S1_at--869--1311Chr03:28189033..28189057 (25 bp)
AGATGGACCTCGCAGACGGCAACGT
LOC_Os03g49590
OsAffx.13424.1.S1_at--277--9491Chr03:28189000..28189024 (25 bp)
TCTGCCACGGGTACGGCGAGCACGA
LOC_Os03g49590
OsAffx.13424.1.S1_at--244--5951Chr03:28188983..28189007 (25 bp)
GAGCACGACCACAGCCGGTCGGTGT
LOC_Os03g49590
OsAffx.13424.1.S1_at--793--7411Chr03:28188887..28188911 (25 bp)
GTGTTCGAGGTGCTGTGCTCCTACC
LOC_Os03g49590
OsAffx.13424.1.S1_at--684--1851Chr03:28188808..28188832 (25 bp)
ACGACAACCTCTTCTGCTCGGAGCA
LOC_Os03g49590
OsAffx.13424.1.S1_at--1069--9211Chr03:28188719..28188743 (25 bp)
TCCACGCCGCTGATATTCATGGGCT
LOC_Os03g49590
OsAffx.13424.1.S1_at--312--4751Chr03:28188711..28188735 (25 bp)
GCTGATATTCATGGGCTTCGTGCCG
LOC_Os03g49590
OsAffx.13424.1.S1_at--1038--4771Chr03:28188646..28188670 (25 bp)
GCTGCGTCGGCAGGACGATCAACAG
LOC_Os03g49590
OsAffx.13424.1.S1_at--1079--371Chr03:28188629..28188653 (25 bp)
ATCAACAGGGTGATCGGCCAGGAGA
LOC_Os03g49590
OsAffx.13424.1.S1_at--724--1371Chr03:28188607..28188631 (25 bp)
AGAGCTGCTGCGACGATTCCTGTGG
LOC_Os03g49590
Target Sequence 
TCAGCTTCTTCTACCGGTTCAGGTGCGTCCACCTGCCGACGCCGTACGTGGCCGGCGGCGGGCGGCGGCTGATCGTGGTG
TCGAACCAGCAGGAGGTCGGCGAGGAGATGGACCTCGCAGACGGCAACGTGCAGCTGCTCTGCCACGGGTACGGCGAGCA
CGACCACAGCCGGTCGGTGTGGTCGGCGCGCGCCGACATCCCCGGCGGCGCGGCGGCGCGCCTGTCGCTGCCCGCCGTGC
GCGGCGACGAGGTGTTCGAGGTGCTGTGCTCCTACCGCGGCGCCAACCGGTGCTGGGCGCACGGCGTGCGCGTGTTCGCC
AACCCGGGCCACGACAACCTCTTCTGCTCGGAGCACGCCGGCGGCTGCGAGGTGCGGTTCCGCAAGGACGGCGGCGTCGA
GAAGCAGTACGGCTCCACCTCCACGCCGCTGATATTCATGGGCTTCGTGCCGGACTTCGACAACGCCAGGGACGGCGCCT
GCGCGTCGTCGAGCTGCGTCGGCAGGACGATCAACAGGGTGATCGGCCAGGAGAGCTGCTGCGACGATTCCTGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13424.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis