Browse Element(s) Details


Os.10801.1.S1_a_at

Description gb:AK058204.1
DB_XREF= gi:32968222
TID=Os.10801.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10801 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033130P17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-010-A06, full insert sequence.
FL= gb:AK059605.1 gb:AK058204.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4957011/11phosphate translocator, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49530Os.14919.1.S1_at5/113+28150804..28156921hypothetical protein
LOC_Os03g49530Os.56216.1.S1_at1/113+28150804..28156921hypothetical protein
LOC_Os03g49540NANA3+28162617..28165110transposon protein, putative, Mutator sub-class
LOC_Os03g49550Os.51915.2.S1_at11/113+28168877..28170460UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os03g49560NANA3+28173871..28174470hypothetical protein
LOC_Os03g49570Os.10801.1.S1_a_at11/113+28178462..28183265phosphate translocator, putative, expressed
LOC_Os03g49580Os.16924.1.S1_at11/113+28185367..28188518Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os03g49590OsAffx.13424.1.S1_at11/113+28188570..28189223hypothetical protein
LOC_Os03g49600Os.5072.1.S1_at11/113+28189476..28194516Glycosyl hydrolase family 1 protein, expressed
LOC_Os03g49610Os.32141.1.S1_at11/113+28197907..28203199Glycosyl hydrolase family 1 protein, expressed
LOC_Os03g49620Os.18919.1.A1_at11/113+28203607..28209054BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10801.1.S1_a_at--377--5431Chr03:28181966..28181990 (25 bp)
GAACCAACTTCCAGCTGATATCGCT
LOC_Os03g49570
Os.10801.1.S1_a_at--503--6511Chr03:28181982..28182006 (25 bp)
GATATCGCTCCTGACAGAGCTACGA
LOC_Os03g49570
Os.10801.1.S1_a_at--1055--331Chr03:28182568..28182592 (25 bp)
ATACAAGCCTGACAATTTCATGGAT
LOC_Os03g49570
Os.10801.1.S1_a_at--862--8951Chr03:28182601..28182625 (25 bp)
TGAAACCACTGTTGGAAGTCTGGCG
LOC_Os03g49570
Os.10801.1.S1_a_at--883--651Chr03:28182645..28182669 (25 bp)
ATGAAGAAGCCCCTTTGATTCCTTC
LOC_Os03g49570
Os.10801.1.S1_a_at--750--3951Chr03:28182692..28182716 (25 bp)
CGGACACAAACTGGCAGCTTCAATA
LOC_Os03g49570
Os.10801.1.S1_a_at--694--6131Chr03:28182754..28182778 (25 bp)
GAGGGAGCAAACTTTGCCCCAGATT
LOC_Os03g49570
Os.10801.1.S1_a_at--1042--3431Chr03:28182773..28182797 (25 bp)
CAGATTAACCAGCTTTCCTCCTGGG
LOC_Os03g49570
Os.10801.1.S1_a_at--216--3111Chr03:28182853..28182877 (25 bp)
AATAGTCCTGCATTCACCTTGGTAT
LOC_Os03g49570
Os.10801.1.S1_a_at--746--1731Chr03:28182868..28182892 (25 bp)
ACCTTGGTATATTTTGCTAGTTGGA
LOC_Os03g49570
Os.10801.1.S1_a_at--998--731Chr03:28182956..28182980 (25 bp)
ATGTTTGACCAGTACTTGGGATCAA
LOC_Os03g49570
Target Sequence 
GAACCAACTTCCAGCTGATATCGCTCCTGACAGAGCTACGAAGGATAAGAAGATTTCAAACATATACAAGCCTGACAATT
TCATGGATTCTAATGATGAAACCACTGTTGGAAGTCTGGCGNCAGAAGGTGCAGGGGTTGATGAAGAAGCCCCTTTGATT
CCTTCTTCACGCCTCTCCTATGTTACCCGGACACAAACTGGCAGCTTCAATAGCAGATGACCATCATTTTCTGAAGTTTT
GAGTTAGTTGAGGGAGCAAACTTTGCCCCAGATTAACCAGCTTTCCTCCTGGGGAGTCTGAAAGAGGTATTAGGATGATA
AACTATAGCCATATTAGAAGCTCTGGTGAATAGTCCTGCATTCACCTTGGTATATTTTGCTAGTTGGAACTGAATGTGTA
TTGGCCAGACACCTGGAGATGAAGTAGAGAAAAGTGCAGGGATAGGGTCAAATGTTTGACCAGTACTTGGGATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10801.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis