Browse Element(s) Details


Os.18919.1.A1_at

Description gb:AK111846.1
DB_XREF= gi:37988509
TID=Os.18919.1
CNT=19
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.18919 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023143O14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023143O14, full insert sequence.
FL= gb:AK111846.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4962011/11BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49570Os.10801.1.S1_a_at11/113+28178462..28183265phosphate translocator, putative, expressed
LOC_Os03g49580Os.16924.1.S1_at11/113+28185367..28188518Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os03g49590OsAffx.13424.1.S1_at11/113+28188570..28189223hypothetical protein
LOC_Os03g49600Os.5072.1.S1_at11/113+28189476..28194516Glycosyl hydrolase family 1 protein, expressed
LOC_Os03g49610Os.32141.1.S1_at11/113+28197907..28203199Glycosyl hydrolase family 1 protein, expressed
LOC_Os03g49620Os.18919.1.A1_at11/113+28203607..28209054BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os03g49630Os.27346.1.S1_at11/113+28209757..28215653expressed protein
LOC_Os03g49640Os.14595.1.S1_at11/113+28218775..28224883Mitogen-activated protein kinase 1, putative, expressed
LOC_Os03g49650NANA3+28228066..28228527retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g49660NANA3+28229639..28234007retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18919.1.A1_at--337--4911Chr03:28204508..28204532 (25 bp)
GCTTCTTGAGCTGGTCACTGGACAA
LOC_Os03g49620
Os.18919.1.A1_at--395--4171Chr03:28204481..28204505 (25 bp)
CGCCATCGACTTCTCACGGTTGGAG
LOC_Os03g49620
Os.18919.1.A1_at--316--1391Chr03:28204451..28204475 (25 bp)
AGACGATGTGCTACTGCTTGACCAT
LOC_Os03g49620
Os.18919.1.A1_at--780--491Chr03:28204097..28204121 (25 bp)
ATCGTGGACCGGAACCTGAGCAGCA
LOC_Os03g49620
Os.18919.1.A1_at--522--8911Chr03:28204081..28204105 (25 bp)
TGAGCAGCAACTACGACGGGCAGGA
LOC_Os03g49620
Os.18919.1.A1_at--1152--8851Chr03:28204048..28204072 (25 bp)
TGATGATACAGATCGCGCTGCTGTG
LOC_Os03g49620
Os.18919.1.A1_at--355--1991Chr03:28203816..28203840 (25 bp)
ACTGCGTACGTCCTGATGCATGTCA
LOC_Os03g49620
Os.18919.1.A1_at--1003--7091Chr03:28203795..28203819 (25 bp)
GTCACTTCCCAATCCCAGTGTTAAT
LOC_Os03g49620
Os.18919.1.A1_at--242--7911Chr03:28203746..28203770 (25 bp)
GGTTGGCTCTTAGTTACCATAGGGT
LOC_Os03g49620
Os.18919.1.A1_at--94--8731Chr03:28203715..28203739 (25 bp)
TGTCACTAAAGAACCCATGTCAAGC
LOC_Os03g49620
Os.18919.1.A1_at--530--3511Chr03:28203700..28203724 (25 bp)
CATGTCAAGCCTCCATTTGTGTAGA
LOC_Os03g49620
Target Sequence 
GCTTCTTGAGCTGGTCACTGGACAACGCGCCATCGACTTCTCACGGTTGGAGGAAGAAGACGATGTGCTACTGCTTGACC
ATGTGAAGAAGCTGCAGAGGGAAGGGCAGCTGGGCGCCATCGTGGACCGGAACCTGAGCAGCAACTACGACGGGCAGGAG
GTGGAGATGATGATACAGATCGCGCTGCTGTGCACNCAGGCGTCGCCGGAGGACCGGCCGTCCATGTCGGAGGTGGTGCG
GATGCTGGAAGGGGAAGGACTCGCGGAGCGGTGGGAGGAGTGGCAGCAGGTGGAGGTGACGCGGCGGCAGGACTACGAGC
GGATGCAGCAGCGCTTCGACTGGGGCGAGGACTCCATCTTCAACCAGGAAGCCATCGAGCTCTCCGCCGGCAGATGACGA
CTGCGTACGTCCTGATGCATGTCACTTCCCAATCCCAGTGTTAATAGATATACATGTATGTATATGTATGGTTGGCTCTT
AGTTACCATAGGGTTGGTTATGTCACTAAAGAACCCATGTCAAGCCTCCATTTGTGTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18919.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis