Browse Element(s) Details


Os.32141.1.S1_at

Description gb:AK120790.1
DB_XREF= gi:37990413
TID=Os.32141.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.32141 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023011K21, full insert sequence.
FL= gb:AK120790.1 gb:AK105850.1 gb:AK059517.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4961011/11Glycosyl hydrolase family 1 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49560NANA3+28173871..28174470hypothetical protein
LOC_Os03g49570Os.10801.1.S1_a_at11/113+28178462..28183265phosphate translocator, putative, expressed
LOC_Os03g49580Os.16924.1.S1_at11/113+28185367..28188518Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os03g49590OsAffx.13424.1.S1_at11/113+28188570..28189223hypothetical protein
LOC_Os03g49600Os.5072.1.S1_at11/113+28189476..28194516Glycosyl hydrolase family 1 protein, expressed
LOC_Os03g49610Os.32141.1.S1_at11/113+28197907..28203199Glycosyl hydrolase family 1 protein, expressed
LOC_Os03g49620Os.18919.1.A1_at11/113+28203607..28209054BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os03g49630Os.27346.1.S1_at11/113+28209757..28215653expressed protein
LOC_Os03g49640Os.14595.1.S1_at11/113+28218775..28224883Mitogen-activated protein kinase 1, putative, expressed
LOC_Os03g49650NANA3+28228066..28228527retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32141.1.S1_at--1101--10631Chr03:28198505..28198529 (25 bp)
TTCGCATGGTCTCTTCTCGATAACT
LOC_Os03g49610
Os.32141.1.S1_at--411--1011Chr03:28198467..28198491 (25 bp)
AGGTTACACATCAAAGTTCGGCATT
LOC_Os03g49610
Os.32141.1.S1_at--57--6291Chr03:28198433..28198457 (25 bp)
GATTTCACTACTCTCAAACGGTACC
LOC_Os03g49610
Os.32141.1.S1_at--1077--9631Chr03:28198367..28198391 (25 bp)
TCAGGGCCTGGCTCAAAATCTGGTT
LOC_Os03g49610
Os.32141.1.S1_at--411--7891Chr03:28198319..28198343 (25 bp)
GGTTCAGCAACTTCAGCAAGCCATC
LOC_Os03g49610
Os.32141.1.S1_at--75--6631Chr03:28198292..28198316 (25 bp)
GTTGGTTCAGCCATCTCAAGTAGCC
LOC_Os03g49610
Os.32141.1.S1_at--524--10671Chr03:28198221..28198245 (25 bp)
TTCCTTCTTCATGTTTTTATCCCTG
LOC_Os03g49610
Os.32141.1.S1_at--891--7971Chr03:28198161..28198185 (25 bp)
GGATGCCAGCAGTATGTTCGCTTTA
LOC_Os03g49610
Os.32141.1.S1_at--829--2951Chr03:28198093..28198117 (25 bp)
AAGGCCATCTTGTTTAATTTTCGCG
LOC_Os03g49610
Os.32141.1.S1_at--308--3131Chr03:28198078..28198102 (25 bp)
AATTTTCGCGTGCTTTTCGCCAGTA
LOC_Os03g49610
Os.32141.1.S1_at--481--9651Chr03:28197931..28197955 (25 bp)
TCAGATATCCTGGACTTTGGCCTGC
LOC_Os03g49610
Target Sequence 
TTCGCATGGTCTCTTCTCGATAACTTCGAGTGGCTGTCAGGTTACACATCAAAGTTCGGCATTGTCTATGTTGATTTCAC
TACTCTCAAACGGTACCCCAAGGACTCAGCCAACTGGTTCAAGAACATGCTGCAGGCATCAGGGCCTGGCTCAAAATCTG
GTTCAGGCACTTCAGATTCTCAAGTTGGTTCAGCAACTTCAGCAAGCCATCCAGTTGGTTCAGCCATCTCAAGTAGCCAT
CGGCTCTTGCTTCCCCTGTTGGTTTCCTTGCATTTTCTTTTCCCTTCCTTCTTCATGTTTTTATCCCTGTAGAAGTAGCA
ATTTAGCAGTGATTAATAAGTAGTGGATGCCAGCAGTATGTTCGCTTTAAAAAATGTGCTGCAGCTAAGAGGAGCTGAGA
GAGACCAACCTGAAGGCCATCTTGTTTAATTTTCGCGTGCTTTTCGCCAGTAGTGAGCACTATGATTCAGAACCAGATTT
GTAGTACTTGTGGTGATTACGCTATTGTGTGTTTCAGTGTTTGTATTTGTAGTATGTATTGATTAAACTACATCAACTTT
TCGGGTTCAGAACTTCAGATATCCTGGACTTTGGCCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32141.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis