Browse Element(s) Details


Os.54020.1.S1_at

Description gb:AK103524.1
DB_XREF= gi:32988733
TID=Os.54020.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54020 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033131K12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033131K12, full insert sequence.
FL= gb:AK103524.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1408010/11AUX1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14050Os.12241.1.S1_at11/113+7605508..7608663SCUTL1, putative, expressed
LOC_Os03g14050Os.12241.2.S1_at10/113+7605508..7608663SCUTL1, putative, expressed
LOC_Os03g14060OsAffx.19542.3.S1_x_at6/113+7615663..7620799retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g14060OsAffx.21754.1.S1_x_at1/113+7615663..7620799retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g14070NANA3+7624932..7625150hypothetical protein
LOC_Os03g14080Os.54020.2.S1_x_at11/113+7625702..7629611AUX1 protein, putative, expressed
LOC_Os03g14080Os.54020.1.S1_at10/113+7625702..7629611AUX1 protein, putative, expressed
LOC_Os03g14080OsAffx.7026.1.S1_x_at2/113+7625702..7629611AUX1 protein, putative, expressed
LOC_Os03g14090Os.53851.1.S1_at11/113+7635251..7637529Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os03g14100NANA3+7643247..7643624hypothetical protein
LOC_Os03g14110OsAffx.12853.1.S1_at11/113+7646975..7649784expressed protein
LOC_Os03g14120Os.51228.1.S1_at11/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120Os.51228.3.S1_at11/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120Os.51228.3.S1_x_at10/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120Os.22668.1.A1_at9/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0009723biological_processresponse to ethylene stimulus
GO:0009733biological_processresponse to auxin stimulus
GO:0009958biological_processpositive gravitropism
GO:0009928cellular_componentcell surface (sensu Magnoliophyta)
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54020.1.S1_at--630--1371Chr03:7629541..7629565 (25 bp)
AGAGCCAGCTAATCTAGCCTCTTTA
LOC_Os03g14080
Os.54020.1.S1_at--56--5871Chr03:7629542..7629566 (25 bp)
GAGCCAGCTAATCTAGCCTCTTTAC
LOC_Os03g14080
Os.54020.1.S1_at--450--1691Chr03:7629543..7629567 (25 bp)
AGCCAGCTAATCTAGCCTCTTTACT
LOC_Os03g14080
Os.54020.1.S1_at--687--4411Chr03:7629544..7629568 (25 bp)
GCCAGCTAATCTAGCCTCTTTACTT
LOC_Os03g14080
Os.54020.1.S1_at--629--4351Chr03:7629545..7629569 (25 bp)
CCAGCTAATCTAGCCTCTTTACTTT
LOC_Os03g14080
Os.54020.1.S1_at--720--3311Chr03:7629546..7629570 (25 bp)
CAGCTAATCTAGCCTCTTTACTTTC
LOC_Os03g14080
Os.54020.1.S1_at--303--1571Chr03:7629547..7629571 (25 bp)
AGCTAATCTAGCCTCTTTACTTTCT
LOC_Os03g14080
Os.54020.1.S1_at--1087--4831Chr03:7629548..7629572 (25 bp)
GCTAATCTAGCCTCTTTACTTTCTC
LOC_Os03g14080
Os.54020.1.S1_at--698--3711Chr03:7629549..7629573 (25 bp)
CTAATCTAGCCTCTTTACTTTCTCT
LOC_Os03g14080
Os.54020.1.S1_at--764--9752Chr11:19004396..19004519 (24 bp)
TAATCTAGCCTCTTTACTTTCTCTC
NONE
Target Sequence 
AGAGCCAGCTAATCTAGCCTCTTTACTTTCTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54020.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis