Browse Element(s) Details


Os.12241.2.S1_at

Description gb:AK107182.1
DB_XREF= gi:32992391
TID=Os.12241.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12241 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-H05, full insert sequence.
FL= gb:AK107182.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1405010/11SCUTL1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14010Os.8022.1.S1_at11/113+7578758..7582090Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g14020Os.20303.1.S1_s_at11/113+7582123..7586658expressed protein
LOC_Os03g14030OsAffx.12851.1.S1_at11/113+7590043..7593136Thaumatin family protein, expressed
LOC_Os03g14030Os.49709.1.S1_at10/113+7590043..7593136Thaumatin family protein, expressed
LOC_Os03g14040Os.32492.1.S1_at10/113+7594971..7597955expressed protein
LOC_Os03g14050Os.12241.1.S1_at11/113+7605508..7608663SCUTL1, putative, expressed
LOC_Os03g14050Os.12241.2.S1_at10/113+7605508..7608663SCUTL1, putative, expressed
LOC_Os03g14060OsAffx.19542.3.S1_x_at6/113+7615663..7620799retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g14060OsAffx.21754.1.S1_x_at1/113+7615663..7620799retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g14070NANA3+7624932..7625150hypothetical protein
LOC_Os03g14080Os.54020.2.S1_x_at11/113+7625702..7629611AUX1 protein, putative, expressed
LOC_Os03g14080Os.54020.1.S1_at10/113+7625702..7629611AUX1 protein, putative, expressed
LOC_Os03g14080OsAffx.7026.1.S1_x_at2/113+7625702..7629611AUX1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042828biological_processresponse to pathogen
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12241.2.S1_at--1158--2711Chr03:7606815..7606839 (25 bp)
AAGCACCACCAGGTAATCGATTTCT
LOC_Os03g14050
Os.12241.2.S1_at--334--1031Chr03:7606825..7606849 (25 bp)
AGGTAATCGATTTCTCCACGACTCC
LOC_Os03g14050
Os.12241.2.S1_at--1004--1791Chr03:7606851..7606875 (25 bp)
ACCCCATGATTCGTACTCGAAGGCT
LOC_Os03g14050
Os.12241.2.S1_at--627--6991Chr03:7606863..7606887 (25 bp)
GTACTCGAAGGCTCGAAGCTTCATA
LOC_Os03g14050
Os.12241.2.S1_at--339--1551Chr03:7606879..7606903 (25 bp)
AGCTTCATAACTCAGCAACCAACTC
LOC_Os03g14050
Os.12241.2.S1_at--560--9291Chr03:7606902..7606926 (25 bp)
TCCCCTTACAATTAGGCGCGCTTAG
LOC_Os03g14050
Os.12241.2.S1_at--742--4871Chr03:7606921..7606945 (25 bp)
GCTTAGGCGCGAAATGTACGGTCGA
LOC_Os03g14050
Os.12241.2.S1_at--253--8711Chr03:7606935..7606959 (25 bp)
TGTACGGTCGAACTGCCTTAAAAGT
LOC_Os03g14050
Os.12241.2.S1_at--618--9711Chr03:7606959..7606983 (25 bp)
TCAAGTTTTTAACGTGTCGACAACT
LOC_Os03g14050
Os.12241.2.S1_at--995--2531NONE
AACTAATCGACGTAGAGTGCCCGAA
NONE
Os.12241.2.S1_at--486--6111Chr03:7606994..7607018 (25 bp)
GAGTGCCCGAAAATTTTCTGATTTG
LOC_Os03g14050
Target Sequence 
AAGCACCACCAGGTAATCGATTTCTCCACGACTCCCACCCCATGATTCGTACTCGAAGGCTCGAAGCTTCATAACTCAGC
AACCAACTCCCCTTACAATTAGGCGCGCTTAGGCGCGAAATGTACGGTCGAACTGCCTTAAAAGTCAAGTTTTTAACGTG
TCGACAACTAATCGACGTAGAGTGCCCGAAAATTTTCTGATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12241.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis