Browse Element(s) Details


Os.32492.1.S1_at

Description gb:AK061036.1
DB_XREF= gi:32971054
TID=Os.32492.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.32492 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-202-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-205-B02, full insert sequence.
FL= gb:AK104109.1 gb:AK061036.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1404010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14000Os.7524.1.S1_at11/113+7570923..7576500Acyl CoA binding protein, expressed
LOC_Os03g14010Os.8022.1.S1_at11/113+7578758..7582090Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g14020Os.20303.1.S1_s_at11/113+7582123..7586658expressed protein
LOC_Os03g14030OsAffx.12851.1.S1_at11/113+7590043..7593136Thaumatin family protein, expressed
LOC_Os03g14030Os.49709.1.S1_at10/113+7590043..7593136Thaumatin family protein, expressed
LOC_Os03g14040Os.32492.1.S1_at10/113+7594971..7597955expressed protein
LOC_Os03g14050Os.12241.1.S1_at11/113+7605508..7608663SCUTL1, putative, expressed
LOC_Os03g14050Os.12241.2.S1_at10/113+7605508..7608663SCUTL1, putative, expressed
LOC_Os03g14060OsAffx.19542.3.S1_x_at6/113+7615663..7620799retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g14060OsAffx.21754.1.S1_x_at1/113+7615663..7620799retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32492.1.S1_at--910--6131Chr03:7595833..7595857 (25 bp)
GAGGGATAACACACAGCCGTGCTTC
LOC_Os03g14040
Os.32492.1.S1_at--666--651Chr03:7596094..7596118 (25 bp)
ATGCACCACATGTCAAGGCTCTGGA
LOC_Os03g14040
Os.32492.1.S1_at--1083--3751Chr03:7596112..7596136 (25 bp)
CTCTGGAATTCAACCACGCTATCTT
LOC_Os03g14040
Os.32492.1.S1_at--806--1831NONE
ACGCTATCTTGACCGCAGGGAATTC
NONE
Os.32492.1.S1_at--983--7171Chr03:7597655..7597679 (25 bp)
GTCTGATCTGACAACGCCATAATCT
LOC_Os03g14040
Os.32492.1.S1_at--859--6211Chr03:7597784..7597808 (25 bp)
GAGGCCCTTTATAATTCCAGCAGAG
LOC_Os03g14040
Os.32492.1.S1_at--1049--2431Chr03:7597810..7597834 (25 bp)
AAAATGGCTGTTCTCCAGTGGACAA
LOC_Os03g14040
Os.32492.1.S1_at--865--7511Chr03:7597827..7597851 (25 bp)
GTGGACAATGCCGATGACTCAAGTT
LOC_Os03g14040
Os.32492.1.S1_at--572--3591Chr03:7597863..7597887 (25 bp)
CATTCTGCAAGGTACTGTCTGTTTT
LOC_Os03g14040
Os.32492.1.S1_at--562--3511Chr03:7597890..7597914 (25 bp)
CATGTCTTTATGAGTGTTAGCCTAC
LOC_Os03g14040
Os.32492.1.S1_at--1063--9831Chr03:7597928..7597952 (25 bp)
TACAACCTTTTGATGCCTTCTTTTT
LOC_Os03g14040
Target Sequence 
GAGGGATAACACACAGCCGTGCTTCCCCTGCAGTGGCTCTGGGGCACAGGTGTGCAGGTTTTGCACCGGGAAGGGAACAG
TTACTGTAGTGATCGGCGGAGGCGAGACTGAAGTATCAAACTGTGTCAACTGCGATGGGGNTTGGCTCGTTGACATGCAC
CACATGTCAAGGCTCTGGAATTCAACCACGCTATCTTGACCGCAGGGAATTCAAGGATGACGACTAAGGGTTTTGTTATT
GCTAATGATGGTATGCCATATTATTGTCTGATCTGACAACGCCATAATCTGGAGAGGTGCACATTTGAGAATTGATCTGA
TAGTTTTGTGTTGTATTATATGTCCATTTTTGGTAAATATGTATGTATGTCTTCTGAAGCGTCTGAAAAAAATGGAGGCC
CTTTATAATTCCAGCAGAGAAAAATGGCTGTTCTCCAGTGGACAATGCCGATGACTCAAGTTGTAGTGTTAAACATTCTG
CAAGGTACTGTCTGTTTTGACATGTCTTTATGAGTGTTAGCCTACAACAATAGTGCAATACAACCTTTTGATGCCTTCTT
TTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis