Browse Element(s) Details


Os.8022.1.S1_at

Description gb:AK059149.1
DB_XREF= gi:32969167
TID=Os.8022.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8022 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-023-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-023-B07, full insert sequence.
FL= gb:AK059149.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1401011/11Glycosyl hydrolase family 10 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13960Os.10924.1.S1_at10/113+7552393..7556481expressed protein
LOC_Os03g13970OsAffx.12848.1.S1_x_at11/113+7558499..7562799Ubiquitin interaction motif family protein, expressed
LOC_Os03g13970Os.4677.1.S1_a_at11/113+7558499..7562799Ubiquitin interaction motif family protein, expressed
LOC_Os03g13984OsAffx.3235.1.S1_at11/113+7564954..7568832expressed protein
LOC_Os03g13984OsAffx.12849.1.S1_at11/113+7564954..7568832expressed protein
LOC_Os03g14000Os.7524.1.S1_at11/113+7570923..7576500Acyl CoA binding protein, expressed
LOC_Os03g14010Os.8022.1.S1_at11/113+7578758..7582090Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g14020Os.20303.1.S1_s_at11/113+7582123..7586658expressed protein
LOC_Os03g14030OsAffx.12851.1.S1_at11/113+7590043..7593136Thaumatin family protein, expressed
LOC_Os03g14030Os.49709.1.S1_at10/113+7590043..7593136Thaumatin family protein, expressed
LOC_Os03g14040Os.32492.1.S1_at10/113+7594971..7597955expressed protein
LOC_Os03g14050Os.12241.1.S1_at11/113+7605508..7608663SCUTL1, putative, expressed
LOC_Os03g14050Os.12241.2.S1_at10/113+7605508..7608663SCUTL1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8022.1.S1_at--279--8651Chr03:7581598..7581622 (25 bp)
TGTGGACGGCGCTGCACCCCAACGG
LOC_Os03g14010
Os.8022.1.S1_at--1104--1791Chr03:7581613..7581637 (25 bp)
ACCCCAACGGATGCTACCAGATGTG
LOC_Os03g14010
Os.8022.1.S1_at--299--7991Chr03:7581621..7581645 (25 bp)
GGATGCTACCAGATGTGCCTCACCG
LOC_Os03g14010
Os.8022.1.S1_at--421--4451Chr03:7581744..7581768 (25 bp)
GCCTACAGCTTCAGCGGATTCCTCG
LOC_Os03g14010
Os.8022.1.S1_at--1007--6491Chr03:7581863..7581887 (25 bp)
GATATGACCATACGTATGTACACGG
LOC_Os03g14010
Os.8022.1.S1_at--407--9932Chr04:31756504..31756531 (25 bp)
TACGTATGTACACGGTACACCTCCT
NONE
Os.8022.1.S1_at--909--1751Chr03:7581891..7581915 (25 bp)
ACCTCCTCGGTGTATATGGCTTCAA
LOC_Os03g14010
Os.8022.1.S1_at--1075--10091Chr03:7581905..7581929 (25 bp)
TATGGCTTCAAGCTCTGCTGACATC
LOC_Os03g14010
Os.8022.1.S1_at--222--6591Chr03:7582037..7582061 (25 bp)
GATTGAACCATGTACATGTACCTGG
LOC_Os03g14010
Os.8022.1.S1_at--977--3491Chr03:7582051..7582075 (25 bp)
CATGTACCTGGCTCGGGCCGGAGAC
LOC_Os03g14010
Os.8022.1.S1_at--277--9411Chr03:7582063..7582087 (25 bp)
TCGGGCCGGAGACTCGAACGAACCA
LOC_Os03g14010
Target Sequence 
TGTGGACGGCGCTGCACCCCAACGGATGCTACCAGATGTGCCTCACCGACTGGAACNTCAACAACCTCCCCGTCGGAGAC
GTCGTCGACCGCCTCCTGCAGGAGTGGCAGACGGGGCAGGCCGCCGGCCCGACCGACGCGCACGGCGCCTACAGCTTCAG
CGGATTCCTCGGGGAGTACATCGTCTCCGTCACCTACGCCAACAGCACGTCGCAGGCCACCTTCTCGCTCTCTCCCGGCG
ACGAGACCAGGCACATCAACATCCAGATATGACCATACGTATGTACACGGTACACCTCCTCGGTGTATATGGCTTCAAGC
TCTGCTGACATCNGTGACATACTGACATGTCGTCACGTATGTGTAATGGGTGACAGTGTACTGTCACGACTTGTAGGTTG
TAATTGTGGTTACGGAGGTCAGTTAACCATAAATTGGTTCGATTGAACCATGTACATGTACCTGGCTCGGGCCGGAGACT
CGAACGAACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8022.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis