Browse Element(s) Details


OsAffx.12849.1.S1_at

Description tigr:9631.m01333
TID=OsAffx.12849.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1398411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13930OsAffx.3233.1.S1_at11/113+7538631..7540973subtilisin proteinase, putative, expressed
LOC_Os03g13940NANA3+7542916..7543564transposon protein, putative, unclassified
LOC_Os03g13950Os.12975.1.S1_at11/113+7544375..7546827Actin-depolymerizing factor, putative, expressed
LOC_Os03g13960Os.10924.1.S1_at10/113+7552393..7556481expressed protein
LOC_Os03g13970OsAffx.12848.1.S1_x_at11/113+7558499..7562799Ubiquitin interaction motif family protein, expressed
LOC_Os03g13970Os.4677.1.S1_a_at11/113+7558499..7562799Ubiquitin interaction motif family protein, expressed
LOC_Os03g13984OsAffx.3235.1.S1_at11/113+7564954..7568832expressed protein
LOC_Os03g13984OsAffx.12849.1.S1_at11/113+7564954..7568832expressed protein
LOC_Os03g14000Os.7524.1.S1_at11/113+7570923..7576500Acyl CoA binding protein, expressed
LOC_Os03g14010Os.8022.1.S1_at11/113+7578758..7582090Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g14020Os.20303.1.S1_s_at11/113+7582123..7586658expressed protein
LOC_Os03g14030OsAffx.12851.1.S1_at11/113+7590043..7593136Thaumatin family protein, expressed
LOC_Os03g14030Os.49709.1.S1_at10/113+7590043..7593136Thaumatin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12849.1.S1_at--299--1951Chr03:7565432..7565456 (25 bp)
ACGGCGACGGCACGTATGCATACGA
LOC_Os03g13984
OsAffx.12849.1.S1_at--831--1531Chr03:7565384..7565408 (25 bp)
AGCATGCAGAGTGGGCGCTCCCTTT
LOC_Os03g13984
OsAffx.12849.1.S1_at--275--9471Chr03:7565324..7565348 (25 bp)
TCTGGTTCGGGCTTGCAAGGAATAG
LOC_Os03g13984
OsAffx.12849.1.S1_at--444--1011Chr03:7565296..7565320 (25 bp)
AGGTAACCCCATGTGCGCCTGTGAC
LOC_Os03g13984
OsAffx.12849.1.S1_at--662--7791Chr03:7565239..7565263 (25 bp)
GGTCCAGCGCAACATCTGGCAGCAA
LOC_Os03g13984
OsAffx.12849.1.S1_at--811--8251Chr03:7565222..7565246 (25 bp)
GGCAGCAAGATGTCAGGCCGCGAAA
LOC_Os03g13984
OsAffx.12849.1.S1_at--512--4871Chr03:7565154..7565178 (25 bp)
GCTAGGTTCTGCATCGTCAGGATTT
LOC_Os03g13984
OsAffx.12849.1.S1_at--260--9811Chr03:7565103..7565127 (25 bp)
TACAAGTCAGAGTGGGACGGGCCCA
LOC_Os03g13984
OsAffx.12849.1.S1_at--41--7391Chr03:7565075..7565099 (25 bp)
GTGAGGAAGTGTTCGCCGTCCTGAC
LOC_Os03g13984
OsAffx.12849.1.S1_at--799--9271Chr03:7565031..7565055 (25 bp)
TCCGGCGAGCTTGGCAAAGGGCTTC
LOC_Os03g13984
OsAffx.12849.1.S1_at--773--2271Chr03:7564992..7565016 (25 bp)
AAATCTGTCCGCTATAGCCTCGGAG
LOC_Os03g13984
Target Sequence 
ACGGCGACGGCACGTATGCATACGACATCTCGCGCCTCGCATGGGCGAAGCATGCAGAGTGGGCGCTCCCTTTCTCCGGC
CGCGCGGAGTATGTCTCCGAGCACAAGCTCTGGTTCGGGCTTGCAAGGAATAGCACAGGTAACCCCATGTGCGCCTGTGA
CCTCGCCGCTGCCGCCGAACAGGGTTCTCCGCCGGTCCAGCGCAACATCTGGCAGCAAGATGTCAGGCCGCGAAAGGGGT
GGGTGCCTCGTTACTCCAACCTCTTGCACCTGGGCTCCGCTAGGTTCTGCATCGTCAGGATTTTCGCCAAGCCATCGCCG
GAGACGGAGTACAAGTCAGAGTGGGACGGGCCCAAGCGTGAGGAAGTGTTCGCCGTCCTGACCGCCGTCGAGGTGGTGCG
GTCCGGCGAGCTTGGCAAAGGGCTTCGGATGGTCAAGCACAAATCTGTCCGCTATAGCCTCGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12849.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis