Browse Element(s) Details


OsAffx.3233.1.S1_at

Description tigr:9631.m01328
TID=OsAffx.3233.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AL161586 subtilisin proteinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1393011/11subtilisin proteinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13900NANA3+7514214..7520301retrotransposon protein, putative, unclassified
LOC_Os03g13910Os.28943.1.S1_x_at2/113+7521064..7524199retrotransposon protein, putative, unclassified
LOC_Os03g13920Os.26886.3.S1_x_at7/113+7526294..7532544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g13920Os.26886.1.S1_x_at5/113+7526294..7532544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g13920OsAffx.20257.1.S1_at1/113+7526294..7532544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g13920Os.47130.4.A1_x_at1/113+7526294..7532544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g13930OsAffx.3233.1.S1_at11/113+7538631..7540973subtilisin proteinase, putative, expressed
LOC_Os03g13940NANA3+7542916..7543564transposon protein, putative, unclassified
LOC_Os03g13950Os.12975.1.S1_at11/113+7544375..7546827Actin-depolymerizing factor, putative, expressed
LOC_Os03g13960Os.10924.1.S1_at10/113+7552393..7556481expressed protein
LOC_Os03g13970OsAffx.12848.1.S1_x_at11/113+7558499..7562799Ubiquitin interaction motif family protein, expressed
LOC_Os03g13970Os.4677.1.S1_a_at11/113+7558499..7562799Ubiquitin interaction motif family protein, expressed
LOC_Os03g13984OsAffx.3235.1.S1_at11/113+7564954..7568832expressed protein
LOC_Os03g13984OsAffx.12849.1.S1_at11/113+7564954..7568832expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009827biological_processcell wall modification (sensu Magnoliophyta)
GO:0005576cellular_componentextracellular region
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004289molecular_functionsubtilase activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3233.1.S1_at--795--2011Chr03:7539043..7539067 (25 bp)
ACTACGTCGCGTTCATGTGCAGCAT
LOC_Os03g13930
OsAffx.3233.1.S1_at--1115--871Chr03:7539010..7539034 (25 bp)
AGGCCAACGCGATCGAGGTGATCAC
LOC_Os03g13930
OsAffx.3233.1.S1_at--388--1051Chr03:7538995..7539019 (25 bp)
AGGTGATCACGCACAAGCCCGTGGC
LOC_Os03g13930
OsAffx.3233.1.S1_at--860--7211Chr03:7538922..7538946 (25 bp)
GTCGATCTCCGTGGTGTTCTACGGC
LOC_Os03g13930
OsAffx.3233.1.S1_at--352--2631Chr03:7538894..7538918 (25 bp)
AACCAGTCCAAGACAGTGATACGCA
LOC_Os03g13930
OsAffx.3233.1.S1_at--779--2131Chr03:7538882..7538906 (25 bp)
ACAGTGATACGCACGGCGACCAACG
LOC_Os03g13930
OsAffx.3233.1.S1_at--692--7231Chr03:7538844..7538868 (25 bp)
GTCCGCGACGTACAAGCCACGCGTG
LOC_Os03g13930
OsAffx.3233.1.S1_at--845--7431Chr03:7538801..7538825 (25 bp)
GTGTCCGTAACCATCAAGCCGGAAA
LOC_Os03g13930
OsAffx.3233.1.S1_at--493--9711Chr03:7538788..7538812 (25 bp)
TCAAGCCGGAAAAGCTCGTCTTCTC
LOC_Os03g13930
OsAffx.3233.1.S1_at--331--2771Chr03:7538753..7538777 (25 bp)
AAGACGCAGAGGTTCGCCGTCACAG
LOC_Os03g13930
OsAffx.3233.1.S1_at--795--7731Chr03:7538691..7538715 (25 bp)
GGTGTACGGACACCTCGTCTGGTCC
LOC_Os03g13930
Target Sequence 
ACTACGTCGCGTTCATGTGCAGCATCGGCTACGAGGCCAACGCGATCGAGGTGATCACGCACAAGCCCGTGGCGTGCCCC
GCGACGAGCAGGAACCCCTCGGGCTCCGACCTCAACTACCCGTCGATCTCCGTGGTGTTCTACGGCGGCAACCAGTCCAA
GACAGTGATACGCACGGCGACCAACGTCGGCGCCGCAGCGTCCGCGACGTACAAGCCACGCGTGGAGATGGCGAGCAGCG
CCGTGTCCGTAACCATCAAGCCGGAAAAGCTCGTCTTCTCCCCGACCGCCAAGACGCAGAGGTTCGCCGTCACAGTGGCC
TCGTCGTCGTCGTCTCCCCCCGCATCCGCGCCGGTGTACGGACACCTCGTCTGGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3233.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis