Browse Element(s) Details


Os.12975.1.S1_at

Description gb:AK104056.1
DB_XREF= gi:32989265
TID=Os.12975.1
CNT=16
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.12975 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-024-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-C02, full insert sequence.
FL= gb:AK104056.1 gb:AK068859.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1395011/11Actin-depolymerizing factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13900NANA3+7514214..7520301retrotransposon protein, putative, unclassified
LOC_Os03g13910Os.28943.1.S1_x_at2/113+7521064..7524199retrotransposon protein, putative, unclassified
LOC_Os03g13920Os.26886.3.S1_x_at7/113+7526294..7532544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g13920Os.26886.1.S1_x_at5/113+7526294..7532544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g13920OsAffx.20257.1.S1_at1/113+7526294..7532544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g13920Os.47130.4.A1_x_at1/113+7526294..7532544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g13930OsAffx.3233.1.S1_at11/113+7538631..7540973subtilisin proteinase, putative, expressed
LOC_Os03g13940NANA3+7542916..7543564transposon protein, putative, unclassified
LOC_Os03g13950Os.12975.1.S1_at11/113+7544375..7546827Actin-depolymerizing factor, putative, expressed
LOC_Os03g13960Os.10924.1.S1_at10/113+7552393..7556481expressed protein
LOC_Os03g13970OsAffx.12848.1.S1_x_at11/113+7558499..7562799Ubiquitin interaction motif family protein, expressed
LOC_Os03g13970Os.4677.1.S1_a_at11/113+7558499..7562799Ubiquitin interaction motif family protein, expressed
LOC_Os03g13984OsAffx.3235.1.S1_at11/113+7564954..7568832expressed protein
LOC_Os03g13984OsAffx.12849.1.S1_at11/113+7564954..7568832expressed protein
LOC_Os03g14000Os.7524.1.S1_at11/113+7570923..7576500Acyl CoA binding protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007015biological_processactin filament organization
GO:0005622cellular_componentintracellular
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12975.1.S1_at--27--7831Chr03:7544922..7544946 (25 bp)
GGTCACCGACCGCATCGAGGATAAG
LOC_Os03g13950
Os.12975.1.S1_at--287--1691Chr03:7544897..7544921 (25 bp)
AGCCAAGATTCTGTACGCGACGTCG
LOC_Os03g13950
Os.12975.1.S1_at--386--7691Chr03:7544844..7544868 (25 bp)
GGGTCCACTACGAGGTGCAAGCCAC
LOC_Os03g13950
Os.12975.1.S1_at--206--6031Chr03:7544809..7544833 (25 bp)
GAGATGGGCTACGACGTCATCCGAG
LOC_Os03g13950
Os.12975.1.S1_at--985--10711Chr03:7544715..7544739 (25 bp)
TTGCGGCGCTGTACTTAGCACGTAC
LOC_Os03g13950
Os.12975.1.S1_at--562--3031Chr03:7544668..7544692 (25 bp)
AATCGGACGGATGCTAATTGGCTCT
LOC_Os03g13950
Os.12975.1.S1_at--958--3171Chr03:7544653..7544677 (25 bp)
AATTGGCTCTCTCGTTCTCGTAGTA
LOC_Os03g13950
Os.12975.1.S1_at--779--6551Chr03:7544496..7544520 (25 bp)
GATTAGTGAAACGTCCCATGTCGGT
LOC_Os03g13950
Os.12975.1.S1_at--920--5591Chr03:7544465..7544489 (25 bp)
GAAATTCCACTGATGATGCTCCACT
LOC_Os03g13950
Os.12975.1.S1_at--302--4791Chr03:7544448..7544472 (25 bp)
GCTCCACTTGGTTGATTAATTGTTC
LOC_Os03g13950
Os.12975.1.S1_at--948--3271Chr03:7544400..7544424 (25 bp)
CAAAATTTTGTTCGCCTGCTGGAAT
LOC_Os03g13950
Target Sequence 
GGTCACCGACCGCATCGAGGATAAGAGCCAAGATTCTGTACGCGACGTCGAAGCAAGGGCTGAGGCGGGTGCTTGACGGG
GTCCACTACGAGGTGCAAGCCACGGACTCCTCCGAGATGGGCTACGACGTCATCCGAGGCCGCGCTCAGTGAGCTGAGCT
CCTCCGGCGCCGGCGCGCCGCCGCGACGCGACGAGTCGCGGGCGGGCTTGCGGCGCTGTACTTAGCACGTACTCACCCCC
AGTGTGTGTGGTATAATCGGACGGATGCTAATTGGCTCTCTCGTTCTCGTAGTAGGGCGGCTGATGATGCGATCTGACGA
GGGTTTGTGAATTTGGTTTAGAGTTTGGCGTGGCGTGGCGTGCTGTTTCGTTTGGAGAGTTGGAGGGGTGTGTGTAGCGT
GGCGTGTTGCTGAGGGAGTGGCAGCGGATTAGTGAAACGTCCCATGTCGGTGACGTAGAAATTCCACTGATGATGCTCCA
CTTGGTTGATTAATTGTTCCAGGAAACATGATCGGGGTGCTTCAAAATTTTGTTCGCCTGCTGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis