Browse Element(s) Details


Os.51228.1.S1_at

Description gb:AK069529.1
DB_XREF= gi:32979553
TID=Os.51228.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51228 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033088H16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019A15, full insert sequence.
FL= gb:AK069529.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1412011/11dihydrodipicolinate reductase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14080Os.54020.2.S1_x_at11/113+7625702..7629611AUX1 protein, putative, expressed
LOC_Os03g14080Os.54020.1.S1_at10/113+7625702..7629611AUX1 protein, putative, expressed
LOC_Os03g14080OsAffx.7026.1.S1_x_at2/113+7625702..7629611AUX1 protein, putative, expressed
LOC_Os03g14090Os.53851.1.S1_at11/113+7635251..7637529Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os03g14100NANA3+7643247..7643624hypothetical protein
LOC_Os03g14110OsAffx.12853.1.S1_at11/113+7646975..7649784expressed protein
LOC_Os03g14120Os.51228.1.S1_at11/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120Os.51228.3.S1_at11/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120Os.51228.3.S1_x_at10/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120Os.22668.1.A1_at9/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14130Os.51228.2.A1_at11/113+7654818..7656178proline-rich protein, putative, expressed
LOC_Os03g14140Os.7578.1.S1_at10/113+7656746..7658183expressed protein
LOC_Os03g14150Os.6021.1.S1_at11/113+7660578..7661891expressed protein
LOC_Os03g14160OsAffx.12854.1.S1_at11/113+7662468..7663255hypothetical protein
LOC_Os03g14170Os.27934.2.S1_x_at11/113+7665799..7667895senescence-associated protein 15, putative, expressed
LOC_Os03g14180Os.8926.1.S1_at11/113+7676068..7677322Small heat shock protein, chloroplast precursor, putative, expressed
LOC_Os03g14190OsAffx.3236.1.S1_at11/113+7677930..7678523RNA-binding region containing protein 1, putative

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Gene Ontology Classification
GO idTypeName
GO:0009089biological_processlysine biosynthesis via diaminopimelate
GO:0008839molecular_functiondihydrodipicolinate reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51228.1.S1_at--738--10731Chr03:7655570..7655594 (25 bp)
TTGCACTTGACAGCCACTTGAAGAC
LOC_Os03g14120
Os.51228.1.S1_at--882--5351Chr03:7655589..7655613 (25 bp)
GAAGACCTGACACATGTTAACCACA
LOC_Os03g14120
Os.51228.1.S1_at--156--2271Chr03:7655646..7655670 (25 bp)
AAATCAGTCACATGGTAGGTCTCGT
LOC_Os03g14120
Os.51228.1.S1_at--386--8091Chr03:7655671..7655695 (25 bp)
GGAGCCGTAATAATCGAACTTTCTA
LOC_Os03g14120
Os.51228.1.S1_at--3--8851Chr03:7655684..7655708 (25 bp)
TCGAACTTTCTAGCCGTTTAATGGT
LOC_Os03g14120
Os.51228.1.S1_at--794--7911Chr03:7655706..7655730 (25 bp)
GGTTGATGATGCTTTAATACGTACT
LOC_Os03g14120
Os.51228.1.S1_at--555--4631Chr03:7655756..7655780 (25 bp)
GCGATTGTGATCAGTGTCCCAGGGT
LOC_Os03g14120
Os.51228.1.S1_at--390--1091Chr03:7655768..7655792 (25 bp)
AGTGTCCCAGGGTTTAGCTTTGGCT
LOC_Os03g14120
Os.51228.1.S1_at--994--2231Chr03:7655804..7655828 (25 bp)
AAATATCGTGTCTTCGAGTCACTCA
LOC_Os03g14120
Os.51228.1.S1_at--518--6091Chr03:7655819..7655843 (25 bp)
GAGTCACTCATCGTGTTGGATCTAC
LOC_Os03g14120
Os.51228.1.S1_at--1022--7951Chr03:7655836..7655860 (25 bp)
GGATCTACTTACACGTTTGACTACA
LOC_Os03g14120
Target Sequence 
TTGCACTTGACAGCCACTTGAAGACCTGACACATGTTAACCACATTATGTTGGAGTTCATGTCGAATGTGTGTACAAAAT
CAGTCACATGGTAGGTCTCGTGGAGCCGTAATAATCGAACTTTCTAGCCGTTTAATGGTTGATGATGCTTTAATACGTAC
TAATAATTATGCAAGTTTGGAGAGGAGCGATTGTGATCAGTGTCCCAGGGTTTAGCTTTGGCTGGATTATTAACAAATAT
CGTGTCTTCGAGTCACTCATCGTGTTGGATCTACTTACACGTTTGACTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51228.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis