Browse Element(s) Details


Os.8926.1.S1_at

Description gb:AB020973.1
DB_XREF= gi:4996283
GEN=Oshsp26
TID=Os.8926.1
CNT=44
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.8926 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for heat shock protein 26, complete cds.
PROD=heat shock protein 26
FL= gb:AK120048.1 gb:AK120045.1 gb:AK063618.1 gb:AB020973.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1418011/11Small heat shock protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14120Os.51228.1.S1_at11/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120Os.51228.3.S1_at11/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120Os.51228.3.S1_x_at10/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120Os.22668.1.A1_at9/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14130Os.51228.2.A1_at11/113+7654818..7656178proline-rich protein, putative, expressed
LOC_Os03g14140Os.7578.1.S1_at10/113+7656746..7658183expressed protein
LOC_Os03g14150Os.6021.1.S1_at11/113+7660578..7661891expressed protein
LOC_Os03g14160OsAffx.12854.1.S1_at11/113+7662468..7663255hypothetical protein
LOC_Os03g14170Os.27934.2.S1_x_at11/113+7665799..7667895senescence-associated protein 15, putative, expressed
LOC_Os03g14180Os.8926.1.S1_at11/113+7676068..7677322Small heat shock protein, chloroplast precursor, putative, expressed
LOC_Os03g14190OsAffx.3236.1.S1_at11/113+7677930..7678523RNA-binding region containing protein 1, putative
LOC_Os03g14210Os.54833.1.S1_at11/113+7686822..7689579Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g14220OsAffx.3237.1.S1_at11/113+7693927..7694867hypothetical protein
LOC_Os03g14220OsAffx.24649.2.S1_x_at4/113+7693927..7694867hypothetical protein
LOC_Os03g14230OsAffx.3238.1.S1_at10/113+7699683..7700771hypothetical protein
LOC_Os03g14230Os.17546.1.S1_a_at1/113+7699683..7700771hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8926.1.S1_at--764--571Chr03:7676503..7676527 (25 bp)
ATGGACCGGATTTTCGACGACGTCG
LOC_Os03g14180
Os.8926.1.S1_at--251--7311Chr03:7676575..7676599 (25 bp)
GTGCGGATGCCGTGGGACGTCATGG
LOC_Os03g14180
Os.8926.1.S1_at--330--971Chr03:7676753..7676777 (25 bp)
AGGAGCGCAGCGTGAGCTCCTACGA
LOC_Os03g14180
Os.8926.1.S1_at--255--7391Chr03:7676764..7676788 (25 bp)
GTGAGCTCCTACGACATGCGGCTCG
LOC_Os03g14180
Os.8926.1.S1_at--1072--5171Chr03:7676879..7676903 (25 bp)
GCAAGGTCATCGACGTGCAGGTCCA
LOC_Os03g14180
Os.8926.1.S1_at--25--7131Chr03:7676884..7676908 (25 bp)
GTCATCGACGTGCAGGTCCAGTAGA
LOC_Os03g14180
Os.8926.1.S1_at--666--1031Chr03:7676897..7676921 (25 bp)
AGGTCCAGTAGACGAATCGCTGCTA
LOC_Os03g14180
Os.8926.1.S1_at--1138--3811Chr03:7676916..7676940 (25 bp)
CTGCTACTACTACTGAACGATCACT
LOC_Os03g14180
Os.8926.1.S1_at--303--2032Chr09:3581193..3581338 (25 bp)
ACTACTGAACGATCACTCTGGAGGA
NONE
Os.8926.1.S1_at--500--3331Chr03:7676937..7676961 (25 bp)
CACTCTGGAGGATGTGAGCCTGTGA
LOC_Os03g14180
Os.8926.1.S1_at--541--9891Chr03:7677002..7677026 (25 bp)
TACTAGAGGTTGTAATTACTCAGCG
LOC_Os03g14180
Target Sequence 
ATGGACCGGATTTTCGACGACGTCGCGCTGGGGTTCCCCGCCACGCCGCGGAGGTCGCTGGCGACGGGGGAGGTGCGGAT
GCCGTGGGACGTCATGGAGGACGACAAGGAGGTGAGGATGCGGTTCGACATGCCGGGCCTGTCGCGGGAGGAGGTGAAGG
TGATGGTGGAGGACGACGCGCTCGTCATCCGCGGGGAGCACAAGAAGGAGGAGGGCGAGGGCGCGGAGGGCTCCGGCGAC
GGGTGGTGGAAGGAGCGCAGCGTGAGCTCCTACGACATGCGGCTCGCGCTCCCCGACGAGTGCGACAAGAGCAAGGTCCG
CGCCGAGCTCAAGAACGGCGTGCTGCTCGTCACCGTGCCCAAGACGGAGGTGGAGCGCAAGGTCATCGACGTGCAGGTCC
AGTAGACGAATCGCTGCTACTACTACTGAACGATCACTCTGGAGGATGTGAGCCTGTGAGCGTGAGGGTTTAAGCAGTGT
GAGGTTTGAAAAAGTCGTGTACTAGAGGTTGTAATTACTCAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8926.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis