Browse Element(s) Details


Os.6021.1.S1_at

Description gb:AK064707.1
DB_XREF= gi:32974725
TID=Os.6021.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6021 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-A07, full insert sequence.
FL= gb:AK064707.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1415011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14090Os.53851.1.S1_at11/113+7635251..7637529Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os03g14100NANA3+7643247..7643624hypothetical protein
LOC_Os03g14110OsAffx.12853.1.S1_at11/113+7646975..7649784expressed protein
LOC_Os03g14120Os.51228.1.S1_at11/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120Os.51228.3.S1_at11/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120Os.51228.3.S1_x_at10/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120Os.22668.1.A1_at9/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14130Os.51228.2.A1_at11/113+7654818..7656178proline-rich protein, putative, expressed
LOC_Os03g14140Os.7578.1.S1_at10/113+7656746..7658183expressed protein
LOC_Os03g14150Os.6021.1.S1_at11/113+7660578..7661891expressed protein
LOC_Os03g14160OsAffx.12854.1.S1_at11/113+7662468..7663255hypothetical protein
LOC_Os03g14170Os.27934.2.S1_x_at11/113+7665799..7667895senescence-associated protein 15, putative, expressed
LOC_Os03g14180Os.8926.1.S1_at11/113+7676068..7677322Small heat shock protein, chloroplast precursor, putative, expressed
LOC_Os03g14190OsAffx.3236.1.S1_at11/113+7677930..7678523RNA-binding region containing protein 1, putative
LOC_Os03g14210Os.54833.1.S1_at11/113+7686822..7689579Glycosyl hydrolases family 17 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6021.1.S1_at--534--2571Chr03:7661121..7661145 (25 bp)
AACGGTGACCACGTCGCTGGCAACG
LOC_Os03g14150
Os.6021.1.S1_at--1084--9671Chr03:7660868..7660892 (25 bp)
TCACCGCCATCGGAGTTGGCTTCAT
LOC_Os03g14150
Os.6021.1.S1_at--417--71Chr03:7660830..7660854 (25 bp)
ATTGCCATGGGCTTGGGCCACTGAA
LOC_Os03g14150
Os.6021.1.S1_at--652--8271Chr03:7660821..7660845 (25 bp)
GGCTTGGGCCACTGAAATACTGAAT
LOC_Os03g14150
Os.6021.1.S1_at--976--91Chr03:7660789..7660813 (25 bp)
ATTCGAGGGCATATATGGTAGCTTC
LOC_Os03g14150
Os.6021.1.S1_at--1006--6951Chr03:7660772..7660796 (25 bp)
GTAGCTTCGGTGCTTGGATGATCAC
LOC_Os03g14150
Os.6021.1.S1_at--214--4931Chr03:7660761..7660785 (25 bp)
GCTTGGATGATCACGTACAGTTACG
LOC_Os03g14150
Os.6021.1.S1_at--958--9831Chr03:7660746..7660770 (25 bp)
TACAGTTACGTAGTGGTTTCTTTGA
LOC_Os03g14150
Os.6021.1.S1_at--943--2971Chr03:7660717..7660741 (25 bp)
AATGGTGATTTAACTCTGGCACAAG
LOC_Os03g14150
Os.6021.1.S1_at--85--3311Chr03:7660698..7660722 (25 bp)
CACAAGAAGCCAGCGGATGTGCGTG
LOC_Os03g14150
Os.6021.1.S1_at--951--7671Chr03:7660636..7660660 (25 bp)
GGGTGTTTGGTTGTATTAGTATCGT
LOC_Os03g14150
Target Sequence 
AACGGTGACCACGTCGCTGGCAACGGCATCGGCGGCGGCGCCGTGGCGCAGCCGGAGCTCCCCGTGGCGCCAGTGCCGCA
GCCGGAGCTTCCGTTGGCGCCGGTGCCGCAGGAGGCTGATCTCGGTGGCGCCGCCGGGGNNNNNCCNNAGGGANAGGGCG
TGGGNCAGACGTCGTTCGGNATTCGGCGCCCANCCNGCTGGTGGACAACAGCCCGTACGACANNGGCGCATGGAAGCAGG
TGGGCGGATGCAGCCTCACCGCCATCGGAGTTGGCTTCATTNTCAACGTCGCCATTGCCATGGGCTTGGGCCACTGAAAT
ACTGAATTCGGAGAATTCGAGGGCATATATGGTAGCTTCGGTGCTTGGATGATCACGTACAGTTACGTAGTGGTTTCTTT
GAAATTAATGGTGATTTAACTCTGGCACAAGAAGCCAGCGGATGTGCGTGCTGTGTGTACTGGTGTGTTGCAGGTGGTGC
TTTTTCTGGGTGTTTGGTTGTATTAGTATCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis