Browse Element(s) Details


Os.7578.1.S1_at

Description gb:AK059409.1
DB_XREF= gi:32969427
TID=Os.7578.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7578 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-027-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-C05, full insert sequence.
FL= gb:AK059409.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1414010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14090Os.53851.1.S1_at11/113+7635251..7637529Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os03g14100NANA3+7643247..7643624hypothetical protein
LOC_Os03g14110OsAffx.12853.1.S1_at11/113+7646975..7649784expressed protein
LOC_Os03g14120Os.51228.1.S1_at11/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120Os.51228.3.S1_at11/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120Os.51228.3.S1_x_at10/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120Os.22668.1.A1_at9/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14130Os.51228.2.A1_at11/113+7654818..7656178proline-rich protein, putative, expressed
LOC_Os03g14140Os.7578.1.S1_at10/113+7656746..7658183expressed protein
LOC_Os03g14150Os.6021.1.S1_at11/113+7660578..7661891expressed protein
LOC_Os03g14160OsAffx.12854.1.S1_at11/113+7662468..7663255hypothetical protein
LOC_Os03g14170Os.27934.2.S1_x_at11/113+7665799..7667895senescence-associated protein 15, putative, expressed
LOC_Os03g14180Os.8926.1.S1_at11/113+7676068..7677322Small heat shock protein, chloroplast precursor, putative, expressed
LOC_Os03g14190OsAffx.3236.1.S1_at11/113+7677930..7678523RNA-binding region containing protein 1, putative

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Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0005618cellular_componentcell wall
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7578.1.S1_at--996--2731Chr03:7657180..7657204 (25 bp)
AAGAAGAAGTTCATGTTCGCCCCGC
LOC_Os03g14140
Os.7578.1.S1_at--449--1811Chr03:7656999..7657023 (25 bp)
ACCCGAAGCTCAAGTTCATGCACAA
LOC_Os03g14140
Os.7578.1.S1_at--110--2471Chr03:7656928..7656952 (25 bp)
AACAACTGAGCTGCACGCGACACGA
LOC_Os03g14140
Os.7578.1.S1_at--446--5631Chr03:7656910..7656934 (25 bp)
GACACGACGCAGCAAAGCTCGATCT
LOC_Os03g14140
Os.7578.1.S1_at--477--431Chr03:7656889..7656913 (25 bp)
ATCTAATTAAGGATGCCGTCGAGTC
LOC_Os03g14140
Os.7578.1.S1_at--7--4251Chr03:7656874..7656898 (25 bp)
CCGTCGAGTCGTTGTAGTTTGTGTT
LOC_Os03g14140
Os.7578.1.S1_at--161--1211Chr03:7656859..7656883 (25 bp)
AGTTTGTGTTTGTCACGTCGCAGTT
LOC_Os03g14140
Os.7578.1.S1_at--569--4011Chr03:7656844..7656868 (25 bp)
CGTCGCAGTTTTCGTTAGTGTTTTG
LOC_Os03g14140
Os.7578.1.S1_at--356--10251Chr03:7656814..7656838 (25 bp)
TTTGGTTCGTGCTGTTTGTGCTGGC
LOC_Os03g14140
Os.7578.1.S1_at--74--3431Chr03:7656779..7656803 (25 bp)
CAGACTTTCAGTTCGTTGCTTTGTT
LOC_Os03g14140
Os.7578.1.S1_at--528--2311Chr03:7656746..7656770 (25 bp)
AAAGATTGTGGTCTATTCAGAGGGT
NONE
Target Sequence 
AAGAAGAAGTTCATGTTCGCCCCGCCGCCGCCGCCGCCGCCCAGGCCACCGGCCCCGGAGTACAAGCCCCCGACACCGAC
ACTGACTCCGATTCCGACGCCGGAGCCATCGTACGGGCCACCGGCGCCNAAGCCACCAGCTCCGCCGGTGGAGGACGAGC
CGCAGCCGTTCTTCCACAAGCACCCGAAGCTCAAGTTCATGCACAAGAAGAAGCCGTGCCCGCCGCTCGTCGACGTGGAC
ATTCCCCGGCCCAACAACTGAGCTGCACGCGACACGACGCAGCAAAGCTCGATCTAATTAAGGATGCCGTCGAGTCGTTG
TAGTTTGTGTTTGTCACGTCGCAGTTTTCGTTAGTGTTTTGTTTGGTTTGGTTCGTGCTGTTTGTGCTGGCATTGCAGTT
TCAGACTTTCAGTTCGTTGCTTTGTTTGTGAAATAAAGATTGTGGTCTATTCAGAGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7578.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis