Browse Element(s) Details


OsAffx.12854.1.S1_at

Description tigr:9631.m01356
TID=OsAffx.12854.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1416011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14090Os.53851.1.S1_at11/113+7635251..7637529Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os03g14100NANA3+7643247..7643624hypothetical protein
LOC_Os03g14110OsAffx.12853.1.S1_at11/113+7646975..7649784expressed protein
LOC_Os03g14120Os.51228.1.S1_at11/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120Os.51228.3.S1_at11/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120Os.51228.3.S1_x_at10/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120Os.22668.1.A1_at9/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14130Os.51228.2.A1_at11/113+7654818..7656178proline-rich protein, putative, expressed
LOC_Os03g14140Os.7578.1.S1_at10/113+7656746..7658183expressed protein
LOC_Os03g14150Os.6021.1.S1_at11/113+7660578..7661891expressed protein
LOC_Os03g14160OsAffx.12854.1.S1_at11/113+7662468..7663255hypothetical protein
LOC_Os03g14170Os.27934.2.S1_x_at11/113+7665799..7667895senescence-associated protein 15, putative, expressed
LOC_Os03g14180Os.8926.1.S1_at11/113+7676068..7677322Small heat shock protein, chloroplast precursor, putative, expressed
LOC_Os03g14190OsAffx.3236.1.S1_at11/113+7677930..7678523RNA-binding region containing protein 1, putative
LOC_Os03g14210Os.54833.1.S1_at11/113+7686822..7689579Glycosyl hydrolases family 17 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12854.1.S1_at--911--9491Chr03:7663008..7663032 (25 bp)
TCTCCATCTCTGTCCAAGACTCTAG
LOC_Os03g14160
OsAffx.12854.1.S1_at--919--9451Chr03:7663016..7663040 (25 bp)
TCTGTCCAAGACTCTAGCAAGGCGG
LOC_Os03g14160
OsAffx.12854.1.S1_at--300--2751Chr03:7663023..7663047 (25 bp)
AAGACTCTAGCAAGGCGGCGGCCTC
LOC_Os03g14160
OsAffx.12854.1.S1_at--256--8431Chr03:7663042..7663066 (25 bp)
GGCCTCTGTCCAGGACTCCAAGTAT
LOC_Os03g14160
OsAffx.12854.1.S1_at--163--9231Chr03:7663050..7663074 (25 bp)
TCCAGGACTCCAAGTATCCAGCGGG
LOC_Os03g14160
OsAffx.12854.1.S1_at--290--5911Chr03:7663100..7663124 (25 bp)
GAGCTAGGCGACGACCGCGATGTCA
LOC_Os03g14160
OsAffx.12854.1.S1_at--220--5811Chr03:7663112..7663136 (25 bp)
GACCGCGATGTCACCAAACTCGATT
LOC_Os03g14160
OsAffx.12854.1.S1_at--318--4151Chr03:7663115..7663139 (25 bp)
CGCGATGTCACCAAACTCGATTGCC
LOC_Os03g14160
OsAffx.12854.1.S1_at--269--4051Chr03:7663132..7663156 (25 bp)
CGATTGCCGCGAGGAGGTAGGTATA
LOC_Os03g14160
OsAffx.12854.1.S1_at--910--10031Chr03:7663153..7663177 (25 bp)
TATAGGGACCTTCGTTCCCGTCTCG
LOC_Os03g14160
OsAffx.12854.1.S1_at--1121--3351Chr03:7663179..7663203 (25 bp)
CACCGCGGCTGTGCTCGGGAGAGAT
LOC_Os03g14160
Target Sequence 
TCTCCATCTCTGTCCAAGACTCTAGCAAGGCGGCGGCCTCTGTCCAGGACTCCAAGTATCCAGCGGGGCGGTGCCCGGTG
GTCGGCGGTGAGGAGCTAGGCGACGACCGCGATGTCACCAAACTCGATTGCCGCGAGGAGGTAGGTATAGGGACCTTCGT
TCCCGTCTCGCCACCGCGGCTGTGCTCGGGAGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12854.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis