Browse Element(s) Details

Os.27934.2.S1_x_at

Description

gb:AK119222.1
DB_XREF= gi:37988845
TID=Os.27934.2
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27934 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-047-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E03, full insert sequence.
FL= gb:AK112059.1 gb:AK119222.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g14170	11/11	senescence-associated protein 15, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g14100	NA	NA	3	+	7643247..7643624	hypothetical protein
LOC_Os03g14110	OsAffx.12853.1.S1_at	11/11	3	+	7646975..7649784	expressed protein
LOC_Os03g14120	Os.51228.1.S1_at	11/11	3	+	7650654..7655907	dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120	Os.51228.3.S1_at	11/11	3	+	7650654..7655907	dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120	Os.51228.3.S1_x_at	10/11	3	+	7650654..7655907	dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120	Os.22668.1.A1_at	9/11	3	+	7650654..7655907	dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14130	Os.51228.2.A1_at	11/11	3	+	7654818..7656178	proline-rich protein, putative, expressed
LOC_Os03g14140	Os.7578.1.S1_at	10/11	3	+	7656746..7658183	expressed protein
LOC_Os03g14150	Os.6021.1.S1_at	11/11	3	+	7660578..7661891	expressed protein
LOC_Os03g14160	OsAffx.12854.1.S1_at	11/11	3	+	7662468..7663255	hypothetical protein
LOC_Os03g14170	Os.27934.2.S1_x_at	11/11	3	+	7665799..7667895	senescence-associated protein 15, putative, expressed
LOC_Os03g14180	Os.8926.1.S1_at	11/11	3	+	7676068..7677322	Small heat shock protein, chloroplast precursor, putative, expressed
LOC_Os03g14190	OsAffx.3236.1.S1_at	11/11	3	+	7677930..7678523	RNA-binding region containing protein 1, putative
LOC_Os03g14210	Os.54833.1.S1_at	11/11	3	+	7686822..7689579	Glycosyl hydrolases family 17 protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0000038	biological_process	very-long-chain fatty acid metabolism
GO:0010025	biological_process	wax biosynthesis
GO:0030497	biological_process	fatty acid elongation
GO:0042335	biological_process	cuticle biosynthesis
GO:0016020	cellular_component	membrane
GO:0008415	molecular_function	acyltransferase activity
GO:0009922	molecular_function	fatty acid elongase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.27934.2.S1_x_at--239--819	1	Chr03:7666212..7666236 (25 bp)	GGAAGAAGAGCTGCAACCCCTGGGT	LOC_Os03g14170
Os.27934.2.S1_x_at--947--893	1	Chr03:7666150..7666174 (25 bp)	TGACGGTTACGTTTTCGTGACCTCG	LOC_Os03g14170
Os.27934.2.S1_x_at--1012--1061	1	Chr03:7666137..7666161 (25 bp)	TTCGTGACCTCGCACAAATTGTATG	LOC_Os03g14170
Os.27934.2.S1_x_at--933--875	1	Chr03:7666118..7666142 (25 bp)	TGTATGATTCATTTCTCCTCACCAA	LOC_Os03g14170
Os.27934.2.S1_x_at--844--681	1	Chr03:7666042..7666066 (25 bp)	GTTTTTTCTTCTTCGCATAGGTTTG	LOC_Os03g14170
Os.27934.2.S1_x_at--327--787	1	Chr03:7666023..7666047 (25 bp)	GGTTTGCTGTAGACATTGCCGGTTA	LOC_Os03g14170
Os.27934.2.S1_x_at--601--519	1	Chr03:7665969..7665993 (25 bp)	GAATTCCAAAAGCTAGCAGTGCCAT	LOC_Os03g14170
Os.27934.2.S1_x_at--130--153	1	Chr03:7665955..7665979 (25 bp)	AGCAGTGCCATTCTTTTCAGTTTTT	LOC_Os03g14170
Os.27934.2.S1_x_at--231--495	1	Chr03:7665921..7665945 (25 bp)	GCATTTGTTTTACACATCCTGGCCT	LOC_Os03g14170
Os.27934.2.S1_x_at--138--219	1	Chr03:7665910..7665934 (25 bp)	ACACATCCTGGCCTTCTAGAAGTTG	LOC_Os03g14170
Os.27934.2.S1_x_at--983--801	1	Chr03:7665871..7665895 (25 bp)	GGAGGACATCACAACATGCCATACT	LOC_Os03g14170

Target Sequence

GGAAGAAGAGCTGCAACCCCTGGGTGGACTGCGTCGCCAAGTACCCGCCCAAGGCGTACGTTTGACGGTTACGTTTTCGT
GACCTCGCACAAATTGTATGATTCATTTCTCCTCACCAAAACACACAAAAAAAAGAGGGCATATGCTGGGGAAGACTTTT
TTTTTTNTGTCGTTTTTTCTTCTTCGCATAGGTTTGCTGTAGACATTGCCGGTTATTGGAATTCAGGGATTTATACGGCG
AATTGAATTCCAAAAGCTAGCAGTGCCATTCTTTTCAGTTTTTGTACTAGCAGCATTTGTTTTACACATCCTGGCCTTCT
AGAAGTTGGGGGGAAACAGAATGGAGGACATCACAACATGCCATACT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis