Browse Element(s) Details


Os.17546.1.S1_a_at

Description gb:AK071701.1
DB_XREF= gi:32981724
TID=Os.17546.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17546 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013066C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023109L16, full insert sequence.
FL= gb:AK066149.1 gb:AK071701.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g142301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14180Os.8926.1.S1_at11/113+7676068..7677322Small heat shock protein, chloroplast precursor, putative, expressed
LOC_Os03g14190OsAffx.3236.1.S1_at11/113+7677930..7678523RNA-binding region containing protein 1, putative
LOC_Os03g14210Os.54833.1.S1_at11/113+7686822..7689579Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g14220OsAffx.3237.1.S1_at11/113+7693927..7694867hypothetical protein
LOC_Os03g14220OsAffx.24649.2.S1_x_at4/113+7693927..7694867hypothetical protein
LOC_Os03g14230OsAffx.3238.1.S1_at10/113+7699683..7700771hypothetical protein
LOC_Os03g14230Os.17546.1.S1_a_at1/113+7699683..7700771hypothetical protein
LOC_Os03g14240OsAffx.12855.1.S1_at11/113+7716407..7717328NA
LOC_Os03g14250Os.13708.1.S1_at11/113+7720007..7728422expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17546.1.S1_a_at--212--351Chr03:30577929..30577953 (25 bp)
ATAACATTTGGGACTAACCTGACAA
NONE
Os.17546.1.S1_a_at--234--3631Chr03:30579381..30579405 (25 bp)
CTTGCTTCCAATAAAGACTTCATTT
NONE
Os.17546.1.S1_a_at--445--7711Chr03:30579419..30579443 (25 bp)
GGGTGCGCTTCAGACATGTGGTCAT
NONE
Os.17546.1.S1_a_at--1098--1391Chr03:30579430..30579454 (25 bp)
AGACATGTGGTCATGCTGCCGGCAA
NONE
Os.17546.1.S1_a_at--1071--8651Chr03:30579435..30579459 (25 bp)
TGTGGTCATGCTGCCGGCAACCGCA
NONE
Os.17546.1.S1_a_at--43--8231Chr03:30579450..30579474 (25 bp)
GGCAACCGCATTGGCTCCTATTCAG
NONE
Os.17546.1.S1_a_at--333--9251Chr03:30579465..30579489 (25 bp)
TCCTATTCAGCTAAGACGCGGTTCT
NONE
Os.17546.1.S1_a_at--993--1813Chr03:30579480..30579504 (25 bp)
ACGCGGTTCTTGATTTGTTGGCGAA
NONE
Os.17546.1.S1_a_at--374--8791Chr03:30579495..30579519 (25 bp)
TGTTGGCGAAAACCCAAATTCTGGG
NONE
Os.17546.1.S1_a_at--543--7432Chr08:11400871..11400905 (25 bp)
GTGTTTTGCTGAATCTGGATATGGC
NONE
Os.17546.1.S1_a_at--569--9671Chr03:30579810..30579834 (25 bp)
TCACGTTGGGCATCAGAACCACATG
NONE
Target Sequence 
ATAACATTTGGGACTAACCTGACAAAGAGGTTCCAGTGTTTCCTCTGCGAAAGTTGTTGCGAAAAGCAGCTGGACAAGAC
AATTATGAGATTCCATTTACATGGTTTTTCTTCATGGTCATGAAGCAACTTGCTCGTTGGACCTGTTGCATAGCTTACAT
GGCTCCTCCCATTATGTCTTGCTTCCAATAAAGACTTCATTTCTTTGATTGTTGGGGGTGCGCTTCAGACATGTGGTCAT
GCTGCCGGCAACCGCATTGGCTCCTATTCAGCTAAGACGCGGTTCTTGATTTGTTGGCGAAAACCCAAATTCTGGGGAAT
CATTGAGCTGACCTGGAGTTCTTGTTCAGTGTTTTGCTGAATCTGGATATGGCGAGCTTTTAGCAGGAAACAAACGCCAG
GAATGATCAAGGGCCTTTTGCTGATCACGTTGGGCATCAGAACCACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17546.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis