Browse Element(s) Details

Os.54020.2.S1_x_at

Description

gb:AK101329.1
DB_XREF= gi:32986538
TID=Os.54020.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54020 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033131K12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033034G17, full insert sequence.
FL= gb:AK101329.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g14080	11/11	AUX1 protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g14050	Os.12241.1.S1_at	11/11	3	+	7605508..7608663	SCUTL1, putative, expressed
LOC_Os03g14050	Os.12241.2.S1_at	10/11	3	+	7605508..7608663	SCUTL1, putative, expressed
LOC_Os03g14060	OsAffx.19542.3.S1_x_at	6/11	3	+	7615663..7620799	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g14060	OsAffx.21754.1.S1_x_at	1/11	3	+	7615663..7620799	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g14070	NA	NA	3	+	7624932..7625150	hypothetical protein
LOC_Os03g14080	Os.54020.2.S1_x_at	11/11	3	+	7625702..7629611	AUX1 protein, putative, expressed
LOC_Os03g14080	Os.54020.1.S1_at	10/11	3	+	7625702..7629611	AUX1 protein, putative, expressed
LOC_Os03g14080	OsAffx.7026.1.S1_x_at	2/11	3	+	7625702..7629611	AUX1 protein, putative, expressed
LOC_Os03g14090	Os.53851.1.S1_at	11/11	3	+	7635251..7637529	Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os03g14100	NA	NA	3	+	7643247..7643624	hypothetical protein
LOC_Os03g14110	OsAffx.12853.1.S1_at	11/11	3	+	7646975..7649784	expressed protein
LOC_Os03g14120	Os.51228.1.S1_at	11/11	3	+	7650654..7655907	dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120	Os.51228.3.S1_at	11/11	3	+	7650654..7655907	dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120	Os.51228.3.S1_x_at	10/11	3	+	7650654..7655907	dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120	Os.22668.1.A1_at	9/11	3	+	7650654..7655907	dihydrodipicolinate reductase family protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006865	biological_process	amino acid transport
GO:0009723	biological_process	response to ethylene stimulus
GO:0009733	biological_process	response to auxin stimulus
GO:0009958	biological_process	positive gravitropism
GO:0009928	cellular_component	cell surface (sensu Magnoliophyta)
GO:0016020	cellular_component	membrane
GO:0005215	molecular_function	transporter activity
GO:0015359	molecular_function	amino acid permease activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.54020.2.S1_x_at--751--673	1	Chr03:7629010..7629034 (25 bp)	GTTCATCATCAACGCGTTCGTGGTG	LOC_Os03g14080
Os.54020.2.S1_x_at--44--129	1	Chr03:7629099..7629123 (25 bp)	AGATCGACACGTTCGGGCTCTTCAC	LOC_Os03g14080
Os.54020.2.S1_x_at--883--169	1	Chr03:7629290..7629314 (25 bp)	AGCCACGGGCTCTGAACACTGAAAT	LOC_Os03g14080
Os.54020.2.S1_x_at--811--73	1	Chr03:7629313..7629337 (25 bp)	ATGTACGTACCAGGGCAATGCTCGA	LOC_Os03g14080
Os.54020.2.S1_x_at--233--1019	1	Chr03:7629351..7629375 (25 bp)	TATAGTTGTTCACTAGCGCCGTCAC	LOC_Os03g14080
Os.54020.2.S1_x_at--329--235	1	Chr03:7629397..7629421 (25 bp)	AAAGCTGCATCTTCTCTAGCTATCA	LOC_Os03g14080
Os.54020.2.S1_x_at--57--487	1	Chr03:7629415..7629439 (25 bp)	GCTATCAGTAGCATGTCAGTCAGAC	LOC_Os03g14080
Os.54020.2.S1_x_at--653--607	1	Chr03:7629441..7629465 (25 bp)	GAGTATCCCGTTTCAAGTTCCTTGG	LOC_Os03g14080
Os.54020.2.S1_x_at--139--281	1	Chr03:7629455..7629479 (25 bp)	AAGTTCCTTGGTTCTGTACTGCCTC	LOC_Os03g14080
Os.54020.2.S1_x_at--777--105	1	Chr03:7629513..7629537 (25 bp)	AGGGAATGTTGCTACGGCCGCAGAT	LOC_Os03g14080
Os.54020.2.S1_x_at--890--451	1	Chr03:7629529..7629553 (25 bp)	GCCGCAGATGCAAGAGCCAGCTAAT	LOC_Os03g14080

Target Sequence

GTTCATCATCAACGCGTTCGTGGTGGCGTGGGTGCTGGTGGTCGGCTTCGGGTTCGGCGGCTGGGCCAGCATGACCAACT
TCGTCCGCCAGATCGACACGTTCGGGCTCTTCACCAAGTGCTACCAGTGCCCGCCGCCCCCTCTGCCGCCGGCGGGCGCC
GCTCCGAACGCCACCTGGCCGCCGTTCCCGGCGACGCCGTTCAACGCCACCACCGCCGGCCTCGCTCCGGCCCCTGCTCC
TTCGCCGGCGCATTTCTTCGGCCGCCACCACCGGCATCACAGCCACGGGCTCTGAACACTGAAATGTACGTACCAGGGCA
ATGCTCGAGCTTTGGTTTAGCTATAGTTGTTCACTAGCGCCGTCACTAATTAGTCATAGCTTAGCACAAAGCTGCATCTT
CTCTAGCTATCAGTAGCATGTCAGTCAGACGGAGTATCCCGTTTCAAGTTCCTTGGTTCTGTACTGCCTCCTGGCGTGGA
GCTCAAAAAACGAACAGAAAAAAAGGGAATGTTGCTACGGCCGCAGATGCAAGAGCCAGCTAAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis