Browse Element(s) Details


Os.5404.3.S1_a_at

Description gb:AK066013.1
DB_XREF= gi:32976031
TID=Os.5404.3
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5404 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0506B12.13 (P0506B12.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013047I12, full insert sequence.
FL= gb:AK100241.1 gb:AK066013.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6188011/11respiratory burst oxidase homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61860OsAffx.23887.2.S1_x_at11/111+36111315..36120301RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os01g61870OsAffx.2382.1.S1_x_at11/111+36134616..36135137hypothetical protein
LOC_Os01g61880Os.5404.3.S1_a_at11/111+36139998..36145413respiratory burst oxidase homolog, putative, expressed
LOC_Os01g61890Os.5404.4.S1_at11/111+36140930..36147714AT hook motif family protein, expressed
LOC_Os01g61890Os.5404.1.S1_a_at11/111+36140930..36147714AT hook motif family protein, expressed
LOC_Os01g61890Os.5404.4.S1_x_at11/111+36140930..36147714AT hook motif family protein, expressed
LOC_Os01g61890Os.5404.1.S2_at10/111+36140930..36147714AT hook motif family protein, expressed
LOC_Os01g61900Os.27209.1.S1_at11/111+36153984..36155621CCT motif family protein, expressed
LOC_Os01g61910Os.8181.1.S1_at11/111+36159821..36162884expressed protein
LOC_Os01g61920NANA1+36167388..36168113Histone H4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006800biological_processoxygen and reactive oxygen species metabolism
GO:0006952biological_processdefense response
GO:0009060biological_processaerobic respiration
GO:0009408biological_processresponse to heat
GO:0009738biological_processabscisic acid mediated signaling
GO:0010053biological_processroot epidermal cell differentiation
GO:0043069biological_processnegative regulation of programmed cell death
GO:0005887cellular_componentintegral to plasma membrane
GO:0016174molecular_functionNAD(P)H oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5404.3.S1_a_at--1108--891Chr01:36143872..36143896 (25 bp)
AGGCGACGCAAGGTCAGCTTTGATT
LOC_Os01g61880
Os.5404.3.S1_a_at--1074--10771Chr01:36143891..36143915 (25 bp)
TTGATTGCCATGGTTCAGTCACTTC
LOC_Os01g61880
Os.5404.3.S1_a_at--875--8251Chr01:36143948..36144056 (25 bp)
GGCAGCAGGATTCGCACACATTTTG
LOC_Os01g61880
Os.5404.3.S1_a_at--1129--2291Chr01:36144073..36144097 (25 bp)
AAAGGTGTTCTCTGACTTGGCGAAT
LOC_Os01g61880
Os.5404.3.S1_a_at--437--2391Chr01:36144106..36144216 (25 bp)
AAACTCACGCATAGGTGTTTTCTAT
LOC_Os01g61880
Os.5404.3.S1_a_at--569--7431Chr01:36144206..36144230 (25 bp)
GTGTTTTCTATTGTGGATCCCCTAC
LOC_Os01g61880
Os.5404.3.S1_a_at--417--3131Chr01:36144263..36144287 (25 bp)
AATTCAGCCAGACAACCACAACTAG
LOC_Os01g61880
Os.5404.3.S1_a_at--821--2191Chr01:36144280..36144304 (25 bp)
ACAACTAGATTCCACTTCCACAAGG
LOC_Os01g61880
Os.5404.3.S1_a_at--227--9851Chr01:36144400..36144424 (25 bp)
TACAAGTTTTGCTCTACGATGGATT
LOC_Os01g61880
Os.5404.3.S1_a_at--1115--5551Chr01:36144441..36144465 (25 bp)
GAAAGCTAGTGTCACCATCGTGCAT
LOC_Os01g61880
Os.5404.3.S1_a_at--419--7111Chr01:36144451..36144475 (25 bp)
GTCACCATCGTGCATAGATTCTGGA
LOC_Os01g61880
Target Sequence 
AGGCGACGCAAGGTCAGCTTTGATTGCCATGGTTCAGTCACTTCAACATGCCAAAAATGGTGTGGATATCGTCTCCGGCA
GCAGGATTCGCACACATTTTGCGAGGCCTAACTGGAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGC
ATAGGTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTTTCAAAAGAATTCAGCCAGACAACCAC
AACTAGATTCCACTTCCACAAGGAAAACTTTTAAGACCGTACCAAAGGACGTCTAAACAGACTGCATATACTTGTATAGG
AAAGAAATACGATAGCATTGGGATAGCAAATATAGTCTTACAAGTTTTGCTCTACGATGGATTGTACAAAATATATGTTG
AAAGCTAGTGTCACCATCGTGCATAGATTCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5404.3.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis