Browse Element(s) Details


Os.5404.4.S1_x_at

Description gb:AK064222.1
DB_XREF= gi:32974240
TID=Os.5404.4
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5404 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0506B12.13 (P0506B12.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-G02, full insert sequence.
FL= gb:AK064222.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6189011/11AT hook motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61860OsAffx.23887.2.S1_x_at11/111+36111315..36120301RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os01g61870OsAffx.2382.1.S1_x_at11/111+36134616..36135137hypothetical protein
LOC_Os01g61880Os.5404.3.S1_a_at11/111+36139998..36145413respiratory burst oxidase homolog, putative, expressed
LOC_Os01g61890Os.5404.4.S1_at11/111+36140930..36147714AT hook motif family protein, expressed
LOC_Os01g61890Os.5404.1.S1_a_at11/111+36140930..36147714AT hook motif family protein, expressed
LOC_Os01g61890Os.5404.4.S1_x_at11/111+36140930..36147714AT hook motif family protein, expressed
LOC_Os01g61890Os.5404.1.S2_at10/111+36140930..36147714AT hook motif family protein, expressed
LOC_Os01g61900Os.27209.1.S1_at11/111+36153984..36155621CCT motif family protein, expressed
LOC_Os01g61910Os.8181.1.S1_at11/111+36159821..36162884expressed protein
LOC_Os01g61920NANA1+36167388..36168113Histone H4, putative, expressed
LOC_Os01g61930Os.35165.1.S1_at11/111+36171524..36181814SAC3/GANP family protein, expressed
LOC_Os01g61930Os.8716.1.S1_at11/111+36171524..36181814SAC3/GANP family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5404.4.S1_x_at--470--7391Chr01:36144089..36144113 (25 bp)
GTGAGTTTTTGTGGGCATTCGCCAA
LOC_Os01g61890
Os.5404.4.S1_x_at--1046--10291Chr01:36144051..36144075 (25 bp)
TTTCTCCAGTTAGGCCTCGCAAAAT
LOC_Os01g61890
Os.5404.4.S1_x_at--152--8191Chr01:36143948..36143972 (25 bp)
GGAAGATGTCGAATACCCTGCTGCC
LOC_Os01g61890
Os.5404.4.S1_x_at--569--5772Chr05:22781109..22781133 (25 bp)
GACGATATCCACACCATTTTTGGCA
NONE
Os.5404.4.S1_x_at--1146--371Chr01:36143701..36143725 (25 bp)
ATCACTTTCAGCGACATCGTTCATG
LOC_Os01g61890
Os.5404.4.S1_x_at--69--9611Chr01:36143681..36143705 (25 bp)
TCATGACTCCTTTAAACCACTCGAA
LOC_Os01g61890
Os.5404.4.S1_x_at--252--6611Chr01:36143632..36143656 (25 bp)
GTAGAAGTAAGCTCTTCCTGGCCCA
LOC_Os01g61890
Os.5404.4.S1_x_at--1123--9271Chr01:36143617..36143641 (25 bp)
TCCTGGCCCATTGTTCTTGAAGCTG
LOC_Os01g61890
Os.5404.4.S1_x_at--376--8991Chr01:36143600..36143624 (25 bp)
TGAAGCTGCCTATCTCAGAACCATG
LOC_Os01g61890
Os.5404.4.S1_x_at--636--9651Chr01:36143586..36143610 (25 bp)
TCAGAACCATGTATGCTTTCCACCT
LOC_Os01g61890
Os.5404.4.S1_x_at--538--6791Chr01:36143538..36143562 (25 bp)
GTTATCTATTTCCTCCAGTTATACA
LOC_Os01g61890
Target Sequence 
GTGAGTTTTTGTGGGCATTCGCCAAGTCAGAGAACACCTTTCTCCAGTTAGGCCTCGCAAAATGTGTGCGAATCTGCAAC
AGATCAATCAGAAATAAGAGGAATACACTGGAAATAAATAAGTATTTCAGATAGAAGAGGGGGAAGATGTCGAATACCCT
GCTGCCGGAGACGATATCCACACCATTTTTGGCATGTTGAAGTGACTGAACCATGGCAATCAAAGCTGACCTTGCGTCGC
CTTCTTCATACACGCTGGTCAGCGAAGAATTGAGAGTGAGACAGTACATTGTGATCACTTTCAGCGACATCGTTCATGAC
TCCTTTAAACCACTCGAAGGACCCTTGCTCTCTGGTCACCCAGTAGAAGTAAGCTCTTCCTGGCCCATTGTTCTTGAAGC
TGCCTATCTCAGAACCATGTATGCTTTCCACCTCCTGTTGCCATCAACTCATTTTAGTTATCTATTTCCTCCAGTTATAC
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5404.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis