Browse Element(s) Details


Os.54113.1.S1_at

Description gb:AK102027.1
DB_XREF= gi:32987236
TID=Os.54113.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54113 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033080N03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033080N03, full insert sequence.
FL= gb:AK102027.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g146999/11Protein kinase domain containing protein, expressed
LOC_Os04g327501/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14660NANA12+8382722..8384434hypothetical protein
LOC_Os12g14670OsAffx.7596.1.S1_at11/1112+8394228..8394895hypothetical protein
LOC_Os12g14680OsAffx.303.1.S1_at1/1112+8402962..8404173retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g14699Os.54113.1.S1_at9/1112+8405319..8415057Protein kinase domain containing protein, expressed
LOC_Os12g14699Os.52367.1.S1_at1/1112+8405319..8415057Protein kinase domain containing protein, expressed
LOC_Os12g14720OsAffx.31892.5.S1_x_at3/1112+8421649..8430214retrotransposon, putative, centromere-specific
LOC_Os12g14720OsAffx.6363.1.S1_at3/1112+8421649..8430214retrotransposon, putative, centromere-specific
LOC_Os12g14720OsAffx.31892.5.S1_at2/1112+8421649..8430214retrotransposon, putative, centromere-specific
LOC_Os12g14720OsAffx.7216.1.S1_at1/1112+8421649..8430214retrotransposon, putative, centromere-specific
LOC_Os12g14730OsAffx.19672.1.S1_at11/1112+8433510..8433800hypothetical protein
LOC_Os12g14740NANA12+8435584..8437856retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g14750Os.49985.1.S1_at1/1112+8438380..8439309retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54113.1.S1_at--226--151Chr12:8406634..8406658 (25 bp)
ATTAGCGGAATGAGCAAGTCTGGAC
LOC_Os12g14699
Os.54113.1.S1_at--709--5951Chr12:8406623..8406647 (25 bp)
GAGCAAGTCTGGACGAGATACTCGT
LOC_Os12g14699
Os.54113.1.S1_at--766--1951Chr12:8405745..8405769 (25 bp)
ACTGTGTGACAACTCTCAACTGAAA
LOC_Os12g14699
Os.54113.1.S1_at--1118--8111NONE
GGACTGCTCTGCACCCAGAAGGAAC
NONE
Os.54113.1.S1_at--895--931NONE
AGGAACTCACGGACCGGCCAACCAT
NONE
Os.54113.1.S1_at--382--9811Chr12:8405559..8405583 (25 bp)
TAAACAAGTGTAGGCAGAACGTCTG
LOC_Os12g14699
Os.54113.1.S1_at--167--5451Chr12:8405543..8405567 (25 bp)
GAACGTCTGTAAGATGGCACAACAA
LOC_Os12g14699
Os.54113.1.S1_at--324--7571Chr12:8405490..8405514 (25 bp)
GGGCGAATGGTTATAGTCCTCAAAA
LOC_Os12g14699
Os.54113.1.S1_at--1151--9432Chr10:10249248..10249267 (20 bp)
TCGGTTTGACCGGTGCGATGCTGCT
NONE
Os.54113.1.S1_at--77--5832Chr12:8405387..8405411 (25 bp)
GACCGCCGATGTCATGCCTATTGGA
LOC_Os12g14699
Os.54113.1.S1_at--664--591Chr12:8405374..8405398 (25 bp)
ATGCCTATTGGACTGCCGAACTTGA
LOC_Os12g14699
Target Sequence 
ATTAGCGGAATGAGCAAGTCTGGACGAGATACTCGTCATCAAGCTTCGATTGAGTGGGCATGGGGAAAACGGAACTCTGG
AGTAATGAACAAGTTATTCGATCCCTCACTGTGTGACAACTCTCAACTGAAAGAGATAAAGAGATGCATTGAGATTGGAC
TGCTCTGCACCCAGAAGGAACTCACGGACCGGCCAACCATGCCAGATGTTCTTCAAATGCTACAGGGCACGAAGAAGGTT
CCAACCCCCAAGCAACCAGGCTACATCAAACGAGTACGGGAAGCAGAACGTTATAAACAAGTGTAGGCAGAACGTCTGTA
AGATGGCACAACAAGATTGGAAGAAATAGACCAACCAAAGAGGGGCGAATGGTTATAGTCCTCAAAAACCAAAAATTTTA
GCGGAACTAAAAGTTACCCACGAAAATGATGGAGATCGGTTTGACCGGTGCGATGCTGCTGGTCCGACCGCCGATGTCAT
GCCTATTGGACTGCCGAACTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54113.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis