Browse Element(s) Details


OsAffx.19672.1.S1_at

Description tigr:9640.m01430
TID=OsAffx.19672.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1473011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14699Os.54113.1.S1_at9/1112+8405319..8415057Protein kinase domain containing protein, expressed
LOC_Os12g14699Os.52367.1.S1_at1/1112+8405319..8415057Protein kinase domain containing protein, expressed
LOC_Os12g14720OsAffx.31892.5.S1_x_at3/1112+8421649..8430214retrotransposon, putative, centromere-specific
LOC_Os12g14720OsAffx.6363.1.S1_at3/1112+8421649..8430214retrotransposon, putative, centromere-specific
LOC_Os12g14720OsAffx.31892.5.S1_at2/1112+8421649..8430214retrotransposon, putative, centromere-specific
LOC_Os12g14720OsAffx.7216.1.S1_at1/1112+8421649..8430214retrotransposon, putative, centromere-specific
LOC_Os12g14730OsAffx.19672.1.S1_at11/1112+8433510..8433800hypothetical protein
LOC_Os12g14740NANA12+8435584..8437856retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g14750Os.49985.1.S1_at1/1112+8438380..8439309retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g14764OsAffx.7598.1.S1_at11/1112+8444221..8447651hypothetical protein
LOC_Os12g14764OsAffx.23409.1.S1_s_at1/1112+8444221..8447651hypothetical protein
LOC_Os12g14780NANA12+8452085..8455138transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g14790NANA12+8456867..8458809transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19672.1.S1_at--699--8831Chr12:8433541..8433565 (25 bp)
TGATCTTCCCAGACCTTTTCGTGCA
LOC_Os12g14730
OsAffx.19672.1.S1_at--480--10651Chr12:8433546..8433570 (25 bp)
TTCCCAGACCTTTTCGTGCAGACAG
LOC_Os12g14730
OsAffx.19672.1.S1_at--517--10391Chr12:8433556..8433580 (25 bp)
TTTTCGTGCAGACAGGTCACCCTAC
LOC_Os12g14730
OsAffx.19672.1.S1_at--185--1031Chr12:8433569..8433593 (25 bp)
AGGTCACCCTACAGCATTCGAAGAT
LOC_Os12g14730
OsAffx.19672.1.S1_at--1039--91Chr12:8433584..8433608 (25 bp)
ATTCGAAGATGGTTTTTGGCCGCCT
LOC_Os12g14730
OsAffx.19672.1.S1_at--844--4091Chr12:8433587..8433611 (25 bp)
CGAAGATGGTTTTTGGCCGCCTGCA
LOC_Os12g14730
OsAffx.19672.1.S1_at--835--4211Chr12:8433603..8433627 (25 bp)
CCGCCTGCAAAAATCCTTTCAATTA
LOC_Os12g14730
OsAffx.19672.1.S1_at--1093--3091Chr12:8433623..8433647 (25 bp)
AATTATTGTTGCACTGACCGTAGGG
LOC_Os12g14730
OsAffx.19672.1.S1_at--408--491Chr12:8433699..8433723 (25 bp)
ATCTGGTGCTGCCTCGTGGACTATG
LOC_Os12g14730
OsAffx.19672.1.S1_at--372--9431Chr12:8433712..8433736 (25 bp)
TCGTGGACTATGAGACTGCTGCCGT
LOC_Os12g14730
OsAffx.19672.1.S1_at--782--10111Chr12:8433720..8433744 (25 bp)
TATGAGACTGCTGCCGTCCCATCAG
LOC_Os12g14730
Target Sequence 
TGATCTTCCCAGACCTTTTCGTGCAGACAGGTCACCCTACAGCATTCGAAGATGGTTTTTGGCCGCCTGCAAAAATCCTT
TCAATTATTGTTGCACTGACCGTAGGGGGCCTCTTCGCCACTGGATCCGGCCGTCTCAGCCGCCCCCGGCCACGCACCAT
CTGGTGCTGCCTCGTGGACTATGAGACTGCTGCCGTCCCATCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19672.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis