Browse Element(s) Details


OsAffx.23409.1.S1_s_at

Description tigr:9629.m02563
TID=OsAffx.23409.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g147641/11hypothetical protein
LOC_Os11g256501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14720OsAffx.31892.5.S1_x_at3/1112+8421649..8430214retrotransposon, putative, centromere-specific
LOC_Os12g14720OsAffx.6363.1.S1_at3/1112+8421649..8430214retrotransposon, putative, centromere-specific
LOC_Os12g14720OsAffx.31892.5.S1_at2/1112+8421649..8430214retrotransposon, putative, centromere-specific
LOC_Os12g14720OsAffx.7216.1.S1_at1/1112+8421649..8430214retrotransposon, putative, centromere-specific
LOC_Os12g14730OsAffx.19672.1.S1_at11/1112+8433510..8433800hypothetical protein
LOC_Os12g14740NANA12+8435584..8437856retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g14750Os.49985.1.S1_at1/1112+8438380..8439309retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g14764OsAffx.7598.1.S1_at11/1112+8444221..8447651hypothetical protein
LOC_Os12g14764OsAffx.23409.1.S1_s_at1/1112+8444221..8447651hypothetical protein
LOC_Os12g14780NANA12+8452085..8455138transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g14790NANA12+8456867..8458809transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g14800NANA12+8461001..8467677retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23409.1.S1_s_at--1121--871Chr01:14943995..14944019 (25 bp)
ATGGCCAGCTTAAGCGCCTGCATGC
NONE
OsAffx.23409.1.S1_s_at--29--3411Chr01:14944000..14944024 (25 bp)
CAGCTTAAGCGCCTGCATGCGAAAA
NONE
OsAffx.23409.1.S1_s_at--385--2671Chr01:14944006..14944030 (25 bp)
AAGCGCCTGCATGCGAAAATCCGAT
NONE
OsAffx.23409.1.S1_s_at--382--41711Chr11:14136146..14136250 (25 bp)
CGCCTGCATGCGAAAATCCGATTTT
LOC_Os11g25650
OsAffx.23409.1.S1_s_at--903--55118Chr12:9325945..9325964 (20 bp)
GAAAATCCGATTTTCGCGTGTGGAT
NONE
OsAffx.23409.1.S1_s_at--942--2274Chr11:14211267..14211287 (21 bp)
AAATCCGATTTTCGCGTGTGGATGC
NONE
OsAffx.23409.1.S1_s_at--66--6551Chr01:14944028..14944052 (25 bp)
GATTTTCGCGTGTGGATGCGACACC
NONE
OsAffx.23409.1.S1_s_at--194--9351Chr01:14944033..14944057 (25 bp)
TCGCGTGTGGATGCGACACCAACAT
NONE
OsAffx.23409.1.S1_s_at--887--8651Chr01:14944038..14944062 (25 bp)
TGTGGATGCGACACCAACATGGAAA
NONE
OsAffx.23409.1.S1_s_at--157--6351Chr01:14944042..14944066 (25 bp)
GATGCGACACCAACATGGAAAATGA
NONE
OsAffx.23409.1.S1_s_at--244--2271Chr01:14944061..14944085 (25 bp)
AAATGACAATTTTCGCAGATCTTTT
NONE
Target Sequence 
ATGGCCAGCTTAAGCGCCTGCATGCGAAAATCCGATTTTCGCGTGTGGATGCGACACCAACATGGAAAATGACAATTTTC
GCAGATCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23409.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis