Browse Element(s) Details


OsAffx.7598.1.S1_at

Description tigr:9640.m01433
TID=OsAffx.7598.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1476411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14720OsAffx.31892.5.S1_x_at3/1112+8421649..8430214retrotransposon, putative, centromere-specific
LOC_Os12g14720OsAffx.6363.1.S1_at3/1112+8421649..8430214retrotransposon, putative, centromere-specific
LOC_Os12g14720OsAffx.31892.5.S1_at2/1112+8421649..8430214retrotransposon, putative, centromere-specific
LOC_Os12g14720OsAffx.7216.1.S1_at1/1112+8421649..8430214retrotransposon, putative, centromere-specific
LOC_Os12g14730OsAffx.19672.1.S1_at11/1112+8433510..8433800hypothetical protein
LOC_Os12g14740NANA12+8435584..8437856retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g14750Os.49985.1.S1_at1/1112+8438380..8439309retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g14764OsAffx.7598.1.S1_at11/1112+8444221..8447651hypothetical protein
LOC_Os12g14764OsAffx.23409.1.S1_s_at1/1112+8444221..8447651hypothetical protein
LOC_Os12g14780NANA12+8452085..8455138transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g14790NANA12+8456867..8458809transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g14800NANA12+8461001..8467677retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7598.1.S1_at--5--2451Chr12:8444568..8444715 (25 bp)
AAAATGTGCGCTCACGTTCAGCAAG
LOC_Os12g14764
OsAffx.7598.1.S1_at--388--8291Chr12:8444536..8444560 (25 bp)
GGCTTGTGCTGCTCGGCGTAATTCA
LOC_Os12g14764
OsAffx.7598.1.S1_at--781--8351Chr12:8444522..8444546 (25 bp)
GGCGTAATTCACAGTGCGGTCACAC
LOC_Os12g14764
OsAffx.7598.1.S1_at--723--1131Chr12:8444510..8444534 (25 bp)
AGTGCGGTCACACAGCATGCCTACG
LOC_Os12g14764
OsAffx.7598.1.S1_at--995--4531Chr12:8444464..8444488 (25 bp)
GCCCTTGTGCCGCTTGTTGGAACCA
LOC_Os12g14764
OsAffx.7598.1.S1_at--490--10771Chr12:8444451..8444475 (25 bp)
TTGTTGGAACCAGCGGCACCAAGCC
LOC_Os12g14764
OsAffx.7598.1.S1_at--396--2651Chr12:8444392..8444416 (25 bp)
AACCACCATCCGCAAGTGCATGGGT
LOC_Os12g14764
OsAffx.7598.1.S1_at--896--7651Chr12:8444343..8444367 (25 bp)
GGGATCACCTCCATGACGGAGCGCC
LOC_Os12g14764
OsAffx.7598.1.S1_at--690--1791Chr12:8444286..8444310 (25 bp)
ACCGCATCCAATGGGAGTGGCCCTG
LOC_Os12g14764
OsAffx.7598.1.S1_at--449--1091Chr12:8444271..8444295 (25 bp)
AGTGGCCCTGTGCACAACGTATCAT
LOC_Os12g14764
OsAffx.7598.1.S1_at--88--2591Chr12:8444256..8444280 (25 bp)
AACGTATCATCACTGTCCATCGGCA
LOC_Os12g14764
Target Sequence 
AAAATGTGCGCTCACGTTCAGCAAGCTCAATTGGCTTGTGCTGCTCGGCGTAATTCACAGTGCGGTCACACAGCATGCCT
ACGCCCCGCCTGTGCCCCTTCCTGGCCCTTGTGCCGCTTGTTGGAACCAGCGGCACCAAGCCCAACCTCTCCACCATCGG
CTCCAACCAGTTCAACAACCACCATCCGCAAGTGCATGGGTGTGGGGCTCGTCATCCACATCATGGGGATCACCTCCATG
ACGGAGCGCCACCGCCTCGCCGTGGACAGCAAGGGCACCACCACCGCATCCAATGGGAGTGGCCCTGTGCACAACGTATC
ATCACTGTCCATCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis