Browse Element(s) Details


Os.54127.1.S1_at

Description gb:AK102073.1
DB_XREF= gi:32987282
TID=Os.54127.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54127 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082G16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082G16, full insert sequence.
FL= gb:AK102073.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1141011/11AUX/IAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11380OsAffx.19542.3.S1_x_at5/1111+6310590..6314320retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g11390Os.10134.1.S1_at11/1111+6316734..631941460S ribosomal protein L10-1, putative, expressed
LOC_Os11g11390Os.11021.2.S1_x_at5/1111+6316734..631941460S ribosomal protein L10-1, putative, expressed
LOC_Os11g11400OsAffx.18798.1.S1_at11/1111+6327183..6327572hypothetical protein
LOC_Os11g11410Os.54127.1.S1_at11/1111+6331361..6337777AUX/IAA family protein, expressed
LOC_Os11g11420OsAffx.18799.1.S1_at10/1111+6343960..6345226IAA18, putative
LOC_Os11g11430OsAffx.18799.1.S1_at11/1111+6352091..6353868expressed protein
LOC_Os11g11430OsAffx.18799.1.S1_s_at11/1111+6352091..6353868expressed protein
LOC_Os11g11440OsAffx.18800.1.S1_s_at11/1111+6354529..6355370protein disulfide isomerase, putative
LOC_Os11g11450OsAffx.7078.1.S1_at11/1111+6357337..6358020hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54127.1.S1_at--710--6931Chr11:6337264..6337288 (25 bp)
GTAGGTTGTTCCTTGCATCAGCAAA
LOC_Os11g11410
Os.54127.1.S1_at--538--2311Chr11:6337326..6337350 (25 bp)
AAAGGTACCTACAGACCTCTTGTCT
LOC_Os11g11410
Os.54127.1.S1_at--1039--5831Chr11:6337339..6337363 (25 bp)
GACCTCTTGTCTGGATATGCATGCT
LOC_Os11g11410
Os.54127.1.S1_at--697--10131Chr11:6337354..6337378 (25 bp)
TATGCATGCTGCTTCCAAAAGCTCC
LOC_Os11g11410
Os.54127.1.S1_at--49--2291Chr11:6337385..6337409 (25 bp)
AAATGCTTCTTTTACGTGTTTGCTG
LOC_Os11g11410
Os.54127.1.S1_at--1013--5671Chr11:6337538..6337562 (25 bp)
GACATATATAGCTCTCGACTTGTGC
LOC_Os11g11410
Os.54127.1.S1_at--1051--4091Chr11:6337553..6337577 (25 bp)
CGACTTGTGCTGTTCATCTTGTATT
LOC_Os11g11410
Os.54127.1.S1_at--827--3011Chr11:6337629..6337653 (25 bp)
AATGCTTCTTGATCACTGTGCATAC
LOC_Os11g11410
Os.54127.1.S1_at--22--10271Chr11:6337657..6337681 (25 bp)
TTTGCGGGCATTAGGTAAGTACTCT
LOC_Os11g11410
Os.54127.1.S1_at--720--2171Chr11:6337696..6337720 (25 bp)
ACACGGATTCAGTATGTCTACACAA
LOC_Os11g11410
Os.54127.1.S1_at--846--131Chr11:6337743..6337767 (25 bp)
ATTAACTACGTTCTTGCTTGCTATA
LOC_Os11g11410
Target Sequence 
GTAGGTTGTTCCTTGCATCAGCAAAAAGGTTGTACATTGCCAAAAACCCAGCACCCAGAAACAAAGGTACCTACAGACCT
CTTGTCTGGATATGCATGCTGCTTCCAAAAGCTCCATATTGAAATGCTTCTTTTACGTGTTTGCTGTGCAATTACTTTGC
AGAACATGCTGAAATCGCCAAAAGGAAAGAAACTGAAGATGCAATAGATAACTGAAGGCACCTGAAAAGCAAGTTGATCT
CTGCATATACTACAATATGCACTTCTCATGATCTGACATATATAGCTCTCGACTTGTGCTGTTCATCTTGTATTATAATA
AGCTATCTTCGAAGAGTAGGTTTATAATGTACGGATGCATGTTAAAATGCTTCTTGATCACTGTGCATACAATTTTGCGG
GCATTAGGTAAGTACTCTGAAAAATGTACTAGACACGGATTCAGTATGTCTACACAAAGTGGATAAGACTCGTCTAATAA
TTAACTACGTTCTTGCTTGCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54127.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis